barSeed - Barley Seed Development Database

Probe CUST_27776_PI390587928

Source Contig U35_12851

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27776_PI390587928	Hv_44K_v2	CGAACCTATGTGTTGCAGATGTGCCATTTTTCTATTGTGCAATTATGTTTGTTATTGCTA	434	GeneList: turquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.153	1.173	1.219	0.939	0.243	0.312
Raw	1640.463	2593.232	2404.380	3063.578	267.936	371.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1530.1	242	8e-25	86 - 145	100	60 / 60	minus
Harvest21	ABC02102	696	3e-25	112 - 171	100	60 / 60	minus	ABC02102
Harvest35	U35_12851	571	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_12851 571 Hv_44K_v2
CATGCGCATGGTGATGTTGCCTGAATAATTTTTGTTTGATGTGATGCAGATGAGCCTGCT
CTACTTCGAGGAGCAGCTGTCGGGGCGGCTGTCGCACGGCCAGCGTGTCGCCTGGCGCGA
CCACTTTGGCCTCATCGACGGCCTCGAGGAAGGGATGGATTTGGTGGGAGGGTACTACAA
TGCCAGCGACCACGTCAAGTTCGGGCTGCCCATGGCCTTCACGGTGACCATACTGTCGTG
GAGCCTGCTTGAGTACGGCGGCAACGTGGCAGCCATCGGCGAGCTCGCGCACAGCCTCGA
GTACATCAAGTGGGGTACCGACTACTTCATCAAGGCGCACACCAAGCCCGACGAGCTTTG
GGCCGAGGAAAGTGGTGAGAAGATGTCGAGGATGCCTACTTGGGACATTTAAATCAACCC
AACATAAAAAATTCCGAACCTATGTGTTGCAGATGTGCCATTTTTCTATTGTGCAATTAT
GTTTGTTATTGCTATATTCGTGTGTAAAGAAATGTATTCATGAGATGACTTATTGTGTTA
TGTAAACGTGGGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_12851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50490.1	554	6e-55	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi1g44430.1	545	2e-57
Arabidopsis v10	AT2G32990.1	525	7e-51	\| Symbols: AtGH9B8, GH9B8 \| glycosyl hydrolase 9B8 \| chr2:14003361-14005844 FORWARD LENGTH=525