barSeed - Barley Seed Development Database

Probe CUST_2776_PI390587928

Source Contig U35_34826

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2776_PI390587928	Hv_44K_v2	TACCTGCTAATCTATGAGCTGCCCAGCTGTTGCTGTGCATGTCCCATACTTAAATCTAAA	716	GeneList: mediumpurple3 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.189	4.259	1.501	0.585	0.901	0.802
Raw	65.131	48.797	15.101	7.724	3.407	3.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47823.1	1347	4e-23	1284 - 1343	98	59 / 60	plus
Harvest35	U35_34826	776	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_34826 776 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTAGCATTACCAACAATA
TCTTAACTTGTCAACAGAGATCACATCATCACAAGCTAACGAAGAACAACAGTTTTACAG
TGCAGGGTGAGAAAAGGGAGGGCTACTTTGTCACTCCCATAGCTAAGGGAAGGCTAATTA
CAAGACCTTGCGAGAAGGATGCAGTAATAGAAACCTTCGGAGCCAAGGCCTAGCAGGGCA
GGGGTCATTGCTCGATCTGGACCGATCTTATATATCGATCCCAACACGCATGCATGCATT
GTTCTAATAAACTGAAAGACAACACCGGGTCCAAAAGGGAAACAAGCTAAACTTGATGCA
CTAGCTATATATATAGCCTGCTCTCTCTCCATGTTGAGTTAGAGCTAGAAGGCAGTTGAT
CAATGAATTAATCCTTCTTCGTCCAGCGGCCGCTCAGGCGGGCGGGTGAAGTGGGCCACG
TCAATGTCCACCGTGGACGCCACGCGGTTCACGGTGCGGGATTTTATTTTGGGAGACTCA
TGGTTGGGTGACACCAGAGTGAGCTACACTTCGGGGCTATGACTGATTAAGATGGTGTCA
TGTTGCCACTGCTCTGTTGATTGATTAACTTGAAATATGGAACCGGATCACATGTAAGGA
CTGGATTGGTAACAATAAGGTGGAAGCTGGTGAGCTGCTATGCTAGCTAGGCTAGCTACC
TGCTAATCTATGAGCTGCCCAGCTGTTGCTGTGCATGTCCCATACTTAAATCTAAA

Homology of Contig U35_34826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None