barSeed - Barley Seed Development Database

Probe CUST_27768_PI390587928

Source Contig U35_24830

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27768_PI390587928	Hv_44K_v2	CTGAGAATATACACTATTCTAATGCGGGTTGCTGGATTAATGCACCTTTCTTCTAAAAAA	395	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.582	2.620	4.252	3.550	0.646	0.242
Raw	17.779	127.029	165.165	209.538	14.310	5.058

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19148.2	2283	3e-21	2201 - 2254	100	54 / 54	plus	ABC46407
JLOC1	JLOC1_13281.1	2300	2e-21	2104 - 2157	100	54 / 54	plus
Harvest35	U35_24830	466	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_24830 466 Hv_44K_v2
GACGGCGAGGGGTGGAAGGGGCTGGACCCCTTCTACTTCTTCATGAACCCGAGCCCGGGG
TACGTCGTCACCTTCCTCAACAAGCTGCCCCACGAGCTCACCTGCAAGGGCGGCAAGACC
AGCCACGAGGTGGCCAACTACATCCAGAGACTCATCGCCTCCACGCTCTCCTACGAGTGC
ACAAACTTCACCAGGAAGGACAAGTACAAGGCGCTCGCCGGCAACGACGGCTCCGTCGTC
TCCAAGCCCAACATCGACAAGAAGAAGTTCATGGGCTCCTAATGATTAAACTTTGCCAAG
GATCCTCAAAAGAAAAGAAATTACGACACCAGCACTGTCAGTCAAATATTAAAAGATGTA
ACAAAGAACATACTCGATGCCTTTGTGCTATTGATCTGAGAATATACACTATTCTAATGC
GGGTTGCTGGATTAATGCACCTTTCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g09480.1	511	7e-58
Arabidopsis v10	None