barSeed - Barley Seed Development Database

Probe CUST_27764_PI390587928

Source Contig U35_24834

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27764_PI390587928	Hv_44K_v2	GTGAACAACTGATCCATATAAGCGATGGAAGGTTTAACCGATCTTTAGACATTCAAAAAA	808	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.572	2.255	1.537	0.753	0.257	0.271
Raw	1007.332	2347.849	1333.773	1066.787	122.557	142.895

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61815.2	2677	9e-22	2 - 56	100	55 / 55	minus	ABC43067
MLOC	MLOC_61815.1	2543	9e-22	13 - 67	100	55 / 55	minus	ABC43067
JLOC1	JLOC1_40417.2	2665	5e-22	2444 - 2498	100	55 / 55	plus
JLOC1	JLOC1_40417.1	2558	5e-22	2337 - 2391	100	55 / 55	plus
Harvest35	U35_24834	879	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (879 bp)

>U35_24834 879 Hv_44K_v2
CCGAACTGTGTTNATGAACATCTAACAAGGGCTGCAACATCGGCTAGAGGTGTTTAAGAC
AGCTTCCAAAGGATGGGGTGTTAGGACCTGGGACACGATCCTCCCGGGGGCTCCAATCTG
TGAATACGTTGGCGTGTTGAGGAGGACCGAAGAAGTGGATGGTGTGCTACAGAATAACTA
CATATTTGACATTGATTGTCTTCAAACTATGAAGGGTTTAGATGGACGGGAGAAAAGGGC
AGGGTCTGACATGAACATGCCATCACTTCACGCTGAGAATGATTCTGAGGCACCACCGGC
ACCGGAGTACTGCATCGATGCTGGCTCTGTCGGAAGTTTTGCAAGGTTCATAAACCACAG
CTGTAACCCTAACCTGTTTGTCCAGTGCGTCCTAACCAATCACCACGACGTCAAGCTAGC
AAAGGTGATGCTTTTTGCCGCTGACACCATACTCCCACTTCAGGAACTCTGCTACGACTA
TGGCTATGTCCTGAACAGTGTTGTTTCTGCGGATGGTGAAATCGTGAAGCTGCCATGCTA
CTGTGGTGCCCCTGACTGCCGCAAGCGACTCTACTAGCGGAGCTCTTCTGTTCTGGATTT
TGGAGGAAGCAGAAGTATATGTAGTATTGGGGACATGAATGTGGCCATACCTGCTGTGTA
TATGACAAGCAGGATATCCTATGATTATTAGCAAAAGAAGCACATTCTCATTTTGTCAGG
GTAGATGACATGCTGGAGATGCTAATTATATTTAGCAAAGGAAGTTTGTCTAAGTGGTGA
CATGCTGGTCATGATGGCATGATATTTTGTGAACAACTGATCCATATAAGCGATGGAAGG
TTTAACCGATCTTTAGACATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70220.1	664	1e-111	protein\|histone-lysine N-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g59430.1	690	7e-115
Arabidopsis v10	AT5G13960.1	624	2e-71	\| Symbols: SUVH4, KYP, SDG33 \| SU(VAR)3-9 homolog 4 \| chr5:4501688-4505979 FORWARD LENGTH=624