- Probe CUST_27759_PI390587928
- Source Contig U35_24839
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27759_PI390587928 | Hv_44K_v2 | GTAACAGCCTAGTGTACGTCATTCTAAGTTTGGTTCTGAATGATTACATCTTTTGGCTCT | 255 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.073 | 1.403 | 1.546 | 1.258 | 0.472 | 0.456 |
| Raw | 600.267 | 1226.756 | 1175.187 | 1492.692 | 201.449 | 207.754 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355682 | 1077 | 2e-24 | 987 - 1046 | 100 | 60 / 60 | plus | ABC26142 |
| MLOC | MLOC_71155.1 | 5363 | 2e-24 | 4298 - 4357 | 100 | 60 / 60 | minus | ABC26142 |
| MLOC | MLOC_71153.8 | 2158 | 2e-24 | 1735 - 1794 | 100 | 60 / 60 | minus | ABC26142 |
| MLOC | MLOC_71153.9 | 2295 | 2e-24 | 1874 - 1933 | 100 | 60 / 60 | minus | ABC26142 |
| MLOC | MLOC_71153.10 | 2730 | 2e-24 | 2309 - 2368 | 100 | 60 / 60 | minus | ABC26142 |
| JLOC1 | JLOC1_47256.1 | 3279 | 8e-25 | 1000 - 1059 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47255.11 | 1752 | 8e-25 | 1370 - 1429 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.10 | 2015 | 8e-25 | 1633 - 1692 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.9 | 2041 | 8e-25 | 1659 - 1718 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.8 | 2571 | 8e-25 | 2189 - 2248 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.7 | 3004 | 8e-25 | 2622 - 2681 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.6 | 2087 | 8e-25 | 1705 - 1764 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.5 | 1993 | 8e-25 | 1611 - 1670 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.4 | 2232 | 8e-25 | 1850 - 1909 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.3 | 2124 | 8e-25 | 1742 - 1801 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.2 | 2103 | 8e-25 | 1721 - 1780 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_47255.1 | 2189 | 8e-25 | 1807 - 1866 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC26142 | 339 | 3e-25 | 256 - 315 | 100 | 60 / 60 | plus | ABC26142 |
| Harvest35 | U35_24839 | 339 | 3e-25 | 256 - 315 | 100 | 60 / 60 | plus |
Contig Sequence (339 bp)
>U35_24839 339 Hv_44K_v2 CTGCAGGAAGCACGAGGCAAGCATGAACCAAGTTAAATTGTTGGATACCGCAAATACCGG TACCTGATTGATTGCGGAGTTTAGAGTTGAAAACCGCAACACAAATACTGGTACCTAATT CTCACCTATGAACGAGTCTACGTTTAAGTGTAGAATCCTGTTCTGCTCAGGGTTGGGTTT GTTCTTTGTTTAGAATCCTGTTCTGCTCAGAGTCAGGTTTGTTCTTTGCTGCTGCTGTGC TGTCAAATTCTGATGGTAACAGCCTAGTGTACGTCATTCTAAGTTTGGTTCTGAATGATT ACATCTTTTGGCTCTTTCTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_24839 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |