barSeed - Barley Seed Development Database

Probe CUST_27757_PI390587928

Source Contig U35_36812

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27757_PI390587928	Hv_44K_v2	AAGAGGGAGCTCAACAGGGAGCAGCCCAAGCCATGAACGCACTCATCTTGACCGATGTAG	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250375.1	2076	2e-24	585 - 644	100	60 / 60	plus	ABC34016
MLOC	AK373536	3737	2e-24	513 - 572	100	60 / 60	plus	ABC34016
MLOC	MLOC_54644.1	407	2e-24	324 - 383	100	60 / 60	minus	ABC34016
MLOC	AK359178	816	7e-23	614 - 670	100	57 / 57	plus	ABC04805 ABC34016
MLOC	MLOC_30450.3	260	7e-23	192 - 248	100	57 / 57	plus	ABC34016
MLOC	MLOC_30450.2	325	7e-23	257 - 313	100	57 / 57	plus	ABC34016
JLOC1	JLOC1_35178.1	393	8e-25	312 - 371	100	60 / 60	minus
JLOC1	JLOC1_20144.1	246	6e-21	161 - 213	100	53 / 53	plus
Harvest21	ABC32194	578	3e-25	508 - 567	100	60 / 60	plus
Harvest21	ABC34016	606	1e-23	386 - 442	100	57 / 57	plus	ABC34016
Harvest35	U35_36812	578	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_38162	606	1e-23	386 - 442	100	57 / 57	plus

Contig Sequence (578 bp)

>U35_36812 578 Hv_44K_v2
GCACGATGCTCCCTCCCGGCGGCGGCGACGGAGCCTAAGAACCGGCGACGGCAACGGCGA
CGGAGACTCCTCGCGTCTGAACGGAATACTTGGATTTCTTGAGGCGAGCTGTTCTTGTCT
TCTCTCGCGCTCTGGCGTCGCGGCGTGGGTGAACGCGCGAGGAGAGGCGCCGAGATGTTT
GCGACGGCGGCGCGGTGGGCGGCGAAGAAGGGGAAGCCCAAGATGGCGCCGATCGAGCTC
ACGACGGCGCCGGAGCAGGCGCAGTCCATCACCCGCACCATCTTCGACGTCGTCAAGGAG
CACGGCCCCCTCACCATCTCTGACGTTTGGGAGCACGTCAAGGACGTAGGGCTGAGGGGT
TTGACAAGCAAGAGGCAGATGAAGATCATGCTGCGGTGGATGAGGGAGAAGCAGAAGCTC
AGGCTCATCTGCGACCATGACGGGCCTCACAAGCAGTTCCTCTACACGACATGGTTCACC
AACCCCAAGAATGCGCCGCAGAGGCCCAAGAGGGAGCTCAACAGGGAGCAGCCCAAGCCA
TGAACGCACTCATCTTGACCGATGTAGGGCATATTTGG

Homology of Contig U35_36812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27140.1	133	4e-77	protein\|expressed protein
Brachypodium v1_2	Bradi3g21898.1	123	1e-79
Arabidopsis v10	None