- Probe CUST_27756_PI390587928
- Source Contig U35_36813
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27756_PI390587928 | Hv_44K_v2 | GCATCGGTTTTCTTAAAACCCATATATATCTCTGAGATAAGTATTTGCACATCTAAGTCC | 427 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 23.653 | 9.905 | 1.553 | 0.502 | 0.169 | 0.159 |
| Raw | 3333.087 | 2161.034 | 294.697 | 158.980 | 17.160 | 18.680 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_4014.1 | 714 | 4e-23 | 611 - 670 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32195 | 523 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus | ABC32195 |
| Harvest35 | U35_36813 | 523 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus |
Contig Sequence (523 bp)
>U35_36813 523 Hv_44K_v2 GGCTGTACCTGAGCGTGATCGGCGCCGGGAGCTTCCTGAGCAGCCTGGTGATCGCGGCGG CGGACCGCGTGAGCTCGCACGGCGGGCGACGGGGCGGGTGGTTCGGCAAGGACCTGAGCC AGAGCAGGCTGGACCTCTTCTACTGGCTACTCGCTGCCATCTCCGCCGTCAACCTGGGTT TCTACGTGATCGTCGCCGCCCGGTACTCGTACAAGCAGACCGTCAAGGGCAACAGGGTCG GCGTCGAGATGGGGCGGCGCCGGCGACGTTGAGTTCGCCACCGCCACCGCCCCTTAACCA AGTTGCAGCAGTGCCGTAGTGGTAATCAAGTAAGGATCCAACCGTGGGCTAGGTAGGAAG GATGTCGAAGCCAATGGCATCATCGTTGGCTGAAATCTGGTTCGTGAGGATTAGTCAAGG GATTAGAGCATCGGTTTTCTTAAAACCCATATATATCTCTGAGATAAGTATTTGCACATC TAAGTCCTACATTATTGATCTTACGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_36813 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |