barSeed - Barley Seed Development Database

Probe CUST_27753_PI390587928

Source Contig U35_36816

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27753_PI390587928	Hv_44K_v2	TATTTTCCGTGAGCAGGATGATGGTCTTCATGCTTCAGCTAAGATTGCTGCGTTTGATTT	553	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.824	1.080	1.927	1.999	0.866	0.889
Raw	85.443	169.564	275.022	464.341	67.862	76.301

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25886.2	2109	2e-24	861 - 920	100	60 / 60	plus	None
MLOC	MLOC_25886.3	968	2e-24	324 - 383	100	60 / 60	plus	None
MLOC	MLOC_25886.1	2138	2e-24	1153 - 1212	100	60 / 60	plus	None
JLOC1	JLOC1_17634.2	1804	8e-25	775 - 834	100	60 / 60	plus
JLOC1	JLOC1_17634.1	2181	8e-25	1152 - 1211	100	60 / 60	plus
Harvest21	ABC32198	635	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_36816	635	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_36816 635 Hv_44K_v2
GGCGAGACCTTGAGAAGAATAATAAGAGAGACCAGACTGCAGTAAGTCCATTGGAAGTAC
CAAGTCCGAAGAAAGCAAAGGTTTCACCTAAAGCAGGGGTGGCTGAAGAAGGAAGTGTCT
CTGTTGAATACGCCAAGTCCGCGCGATCCACCTGCAAGGGCTGCAATGCAAGCATCGCCA
AGGGCGCTCTTCGCATTGGCGTCTCAGCCCATGACCCCCGTGGCTTCGACAGCACCAAGT
GGTACCACGTCCCCTGCTTCCCCACCTCGTCGCATCCACTAGGCCCTGTTGAGAAGCTCA
AGGGGTTCGACTCCATTAAGGATGACGATCGTGGGGAGTTACGGGAGCTAGAGAAGGCCG
CAGTCGGTCCAGTGGATATACCAAGTCCGAACAAAGGGAACGCCCATATATCTTTACCTG
AAGTGGAGGTGGCTGAAAAGTCGTCTCCCGGGAGCAAAAGAGTTGGTACATCGATACCCT
TTTCAGCTTCTGATATCAAGAAAGCATACAAGGATGCTAGCCTTCCCACTCCTTGGAAGG
CTTTTGATACAGTTATTTTCCGTGAGCAGGATGATGGTCTTCATGCTTCAGCTAAGATTG
CTGCGTTTGATTTCGACGGGTGCCTCGCCAAAACC

Homology of Contig U35_36816 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53560.1	459	1e-65	protein\|phosphoesterase, putative, expressed
Brachypodium v1_2	Bradi2g49180.1	460	1e-101
Arabidopsis v10	None