- Probe CUST_27752_PI390587928
- Source Contig U35_36817
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27752_PI390587928 | Hv_44K_v2 | CATTTCTTCCCTCTGCCTTAGTTATCTCGTCTTTAAGATGTATTGTTTGATGTCCAAAAA | 233 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.239 | 1.239 | 1.019 | 0.945 | 0.376 | 0.496 |
| Raw | 1310.807 | 1991.626 | 1477.417 | 2154.747 | 301.755 | 432.451 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_8773.1 | 1339 | 5e-22 | 1118 - 1172 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC32199 | 305 | 3e-25 | 234 - 293 | 100 | 60 / 60 | plus | ABC32199 |
| Harvest35 | U35_36817 | 305 | 3e-25 | 234 - 293 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13809 | 2090 | 2e-22 | 1937 - 1991 | 100 | 55 / 55 | plus |
Contig Sequence (305 bp)
>U35_36817 305 Hv_44K_v2 GGTACTTATAAAGGACGAGTAAATGTGCCCGCGCGTTGAGAAAAAAAACGTCTAATGATG TCTGAAAAGGCAAAACTCCCATTGAATTCAAAGGAGTGCTACTTTTGAATAACATCCTAT AGTAAGCTCTCCGATTGAAAGACTATGCATGATAGAAGTACACTGGAAACTACAAATATG TAGGGGTAAGCAACAGGAAGATGGCAAAAAAAGACATGTCTTTGTCAGCGCAACATTTCT TCCCTCTGCCTTAGTTATCTCGTCTTTAAGATGTATTGTTTGATGTCCAAAAAAAAAAAA AAAAA
Homology of Contig U35_36817 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |