barSeed - Barley Seed Development Database

Probe CUST_27744_PI390587928

Source Contig U35_24840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27744_PI390587928	Hv_44K_v2	TCCCTCCATTTTCTCCTGGACGGTTAGGTGCACCGCCCATCTTTGTGATATGTAATAATT	555	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.200	0.653	2.689	2.604	1.159	0.865
Raw	10.131	48.132	181.061	268.583	43.557	35.600

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353981	4173	2e-24	2873 - 2932	100	60 / 60	plus	ABC15453 ABC15454
MLOC	MLOC_39504.1	2612	2e-24	1287 - 1346	100	60 / 60	plus	ABC15453 ABC15454
JLOC1	JLOC1_25760.1	2656	8e-25	1289 - 1348	100	60 / 60	plus
Harvest21	ABC20508	653	3e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_24840	653	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_24840 653 Hv_44K_v2
GCAACCTTTCCTCGACGCTGCAGAAACTCTACATGTGGGAAAGGAAGCTTCTTCAGGAAG
TTAAGGCTGAAGAGGAGGAAAGGCTCAAGTACGATAGGAAACGCCAGGACCTGCAAATAT
TAGATGAGAAAGGTGCAGAAGCTGAAAAGATCATAGCGACGGAAAAGGAAATAAGGAAGT
TATCAACAAGGATAAGCATAGCTATTCAGGTTGTGAACACTATCTCAGGCAAGATCAGTA
AGCTAAGGGATGATGAGTTATGGCCACAAACATGTGAGCTCATTCAAGGGTTGATGCGGA
TGTGGGACGTTATGTTAGAATGCCATCAGATCCAGCTGCATGCCATATCCCAAGCTAAAA
ACATAGACTCCATGATAGATACTGCAAGGTTTGGTGAAGATCACATGACCTTGATCAAGA
GTCTAGAGCTTCAGCTATTGGACTGGACTACCTGCTTTGCCGGATGGGTTGCCGCTCAAA
AGAACTATGTTAGTACGTTGAATGAGTGGCTGCTGAAAGGAGTTGATTATGTACCCGAGG
AAACGGACGACGGCGTCCCTCCATTTTCTCCTGGACGGTTAGGTGCACCGCCCATCTTTG
TGATATGTAATAATTGGGCAGCCGGTGTGGCGAGGATATCCGAGAAGGAAGTC

Homology of Contig U35_24840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37520.1	920	5e-104	protein\|DUF630/DUF632 domains containing protein, putative, expressed
Brachypodium v1_2	Bradi4g37040.1	925	6e-118
Arabidopsis v10	AT4G35240.1	865	7e-68	Protein of unknown function (DUF630 and DUF632) \| chr4:16761334-16764324 REVERSE LENGTH=865