barSeed - Barley Seed Development Database

Probe CUST_27741_PI390587928

Source Contig U35_24843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27741_PI390587928	Hv_44K_v2	CCAGCCCAAGTCATGGATCCGAACAGAACAGTTTAATTGAAAAACAAAGGAAGGAAAAAA	358	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.142	1.214	1.063	0.879	0.541	0.629
Raw	1541.917	2402.143	1945.193	2369.253	551.282	687.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40880.1	1195	3e-22	919 - 974	100	56 / 56	plus	ABC24806
MLOC	MLOC_40879.1	285	3e-22	214 - 269	100	56 / 56	plus	ABC24806
JLOC1	JLOC1_26692.3	912	1e-22	718 - 773	100	56 / 56	plus
JLOC1	JLOC1_26692.2	1169	1e-22	989 - 1044	100	56 / 56	plus
JLOC1	JLOC1_26692.1	406	1e-22	212 - 267	100	56 / 56	plus
Harvest21	ABC24806	424	3e-25	359 - 418	100	60 / 60	plus	ABC24806
Harvest35	U35_24843	424	3e-25	359 - 418	100	60 / 60	plus

Contig Sequence (424 bp)

>U35_24843 424 Hv_44K_v2
GCCCCGGCTTGCCGCCGCATCTGCGTCCTACTCCTAGCCATCCCTCCCCGCGCGGAGGGC
CCACGGAGAGGCATGCCCCGCGTGGTGTCTCGTTCGCCGCCACCCCACCGACGGCGGCGC
TCCCCGTCGCCGCGGTACGGCAGCAGGCGGCGCTCCCCGTCGCCGCGGTACGGCAGCAGG
CGGATCCGACGAGATCGCAGCCGCTCCCCTTACTCCTCCCGGAGAAAAAGTCCGTCTCCT
TCTCCTAGATGGGACAGGAGCCAGTCCCCAATTCCTAGGAGGCGTAGAAGCCCTCCCTCA
CCAAGGAGACATAGAAGACGGAGAAGTCGGAGCAGCTCAAGTTCTCTTGTAAATAACTCC
AGCCCAAGTCATGGATCCGAACAGAACAGTTTAATTGAAAAACAAAGGAAGGAAAAAAAA
AAAA

Homology of Contig U35_24843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None