- Probe CUST_27739_PI390587928
- Source Contig U35_24845
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27739_PI390587928 | Hv_44K_v2 | CTGTATGAGACAGACATGGCCATGTATGACATTTAGAAAAACGAGTAAAAATAGGGGAAC | 313 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.112 | 2.112 | 0.676 | 0.721 | 0.960 | 0.855 |
| Raw | 59.767 | 24.266 | 5.875 | 10.224 | 2.869 | 3.155 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22363.1 | 983 | 2e-24 | 63 - 122 | 100 | 60 / 60 | minus | ABC24400 |
| JLOC1 | JLOC1_15505.1 | 961 | 8e-25 | 766 - 825 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24400 | 432 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | ABC24400 |
| Harvest21 | ABC18872 | 692 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24845 | 432 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24558 | 692 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus |
Contig Sequence (432 bp)
>U35_24845 432 Hv_44K_v2 GAGAGATCCAAGCACAGGCCGGCCGGCCGGACGACACCGATCGAGAAGGAGGAGGAGACA TGGTGCGCGGGAAGCTGGAGGTGCTGCTCGTCTCTGCCAAGGGACTCGACGACTCCGATT TCTTCATCAAGGACGAGGAGTATCGCGGGGAGATCAAGATCGCACTCACCTTCACCCCGG CAGAGGAAGACGAGGAGGAGGAGAGCTACGGCGGCTGGAATCAGTCCACCTGAAAAAGGC TAGCGAGCCAGCAAGATGGTGCTGCATGTCTATCATAATGTAATGTATAGAAAGGCTTTC CATCTCCTTGATGCTGTATGAGACAGACATGGCCATGTATGACATTTAGAAAAACGAGTA AAAATAGGGGAACAAATATGTATCGATGAAATACTAATTAAGCAATTCACCGCATCAAAA AAAAAAAAAAAA
Homology of Contig U35_24845 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |