barSeed - Barley Seed Development Database

Probe CUST_27733_PI390587928

Source Contig U35_36821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27733_PI390587928	Hv_44K_v2	TCTTGTTAGAAGGTTGCAGTCGGAATTGGAGTCAGAGAAAAAATGCTCAGCGGAATCGAA	585	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.998	1.331	1.379	0.845	0.356	0.399
Raw	130.059	251.432	238.188	235.357	33.919	42.407

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375348	2411	2e-24	1439 - 1498	100	60 / 60	plus	None
MLOC	MLOC_77359.3	3335	2e-24	869 - 928	100	60 / 60	minus	None
MLOC	MLOC_77359.2	3426	2e-24	920 - 979	100	60 / 60	minus	None
MLOC	MLOC_77359.1	3551	2e-24	952 - 1011	100	60 / 60	minus	None
JLOC1	JLOC1_51591.2	3575	8e-25	2453 - 2512	100	60 / 60	plus
JLOC1	JLOC1_51591.1	3552	8e-25	2430 - 2489	100	60 / 60	plus
Harvest21	ABC32207	670	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_36821	670	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_36821 670 Hv_44K_v2
GGCTGGATCAATCAGGCGAGAAATGGCACGTGATGAACAATGCACGAAGCAAGCTGTAGA
AATTCAACAGCTAAATCGTTTGGTGCAACAGTACAAGCATGAGCGAGAGTGCAATGCTGT
AATTGCACAAACAATGGAAGGCAAGATTGCTAGGCTTGAAAGTTTGATGGATGGAACTTT
ACCGACTGATGAATTTATACACGAGGAGTATCTCTCTCTTATGAATGAGCACAAGATCCT
CCAAAAGAAATATGACAACCATCCTGAAGTCCTACGTGCTGAAATTGAGGTGAAGGCACT
CCAGCGGGAATTGGACTTGTGCAGGAATTACATGGACGAGAAAGAGGTTTTACAGGAAGA
GATACATCATCTGAAGAGTCAGTTGCATTATATGCTTTCATCTTCTGCATCGCTTCGCAG
GCTCTGGCCTCCGCTGCAATTGCATCAGAGCACTAATCCTTCGCCTGGAACAAAAGATGA
TGATGGTGATGCTAACATTGCGGATGCTGCTGATTGCGCTGAAGCTGAGAGTAAATGGAT
TGCTCTCATGGACGAGCTCAGGGCTGACCTTGAAGCAAACAAATCTCTTGTTAGAAGGTT
GCAGTCGGAATTGGAGTCAGAGAAAAAATGCTCAGCGGAATCGAAGGAGGCATTGCAAAC
AGCGATGCAG

Homology of Contig U35_36821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28260.1	1095	2e-93	protein\|Kinesin motor domain domain containing protein, expressed
Brachypodium v1_2	Bradi5g06640.1	1077	1e-105
Arabidopsis v10	AT3G23670.1	1313	4e-54	\| Symbols: PAKRP1L, KINESIN-12B \| phragmoplast-associated kinesin-related protein, putative \| chr3:8519290-8525055 FORWARD LENGTH=1313