- Probe CUST_27730_PI390587928
- Source Contig U35_36824
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27730_PI390587928 | Hv_44K_v2 | TTTGACGAATCACGGAAGCTGCCTGATGGATCCCTTATGGAGATTACTAAAGTCTACCCA | 517 | GeneList: darkgrey MasterList: Fatty_acid_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.585 | 0.626 | 1.455 | 2.063 | 1.222 | 1.140 |
| Raw | 398.336 | 591.429 | 1373.143 | 3020.273 | 648.279 | 650.989 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68318.1 | 1674 | 2e-24 | 983 - 1042 | 100 | 60 / 60 | minus | ABC04009 ABC04010 |
| JLOC1 | JLOC1_45193.2 | 1733 | 8e-25 | 636 - 695 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45193.1 | 1901 | 8e-25 | 592 - 651 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32221 | 585 | 3e-25 | 518 - 577 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04009 | 1535 | 3e-25 | 488 - 547 | 100 | 60 / 60 | plus | ABC04009 |
| Harvest35 | U35_36824 | 585 | 3e-25 | 518 - 577 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1359 | 1552 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_36824 585 Hv_44K_v2 GACAATCCTCGCAGCCGCAATCCGCCCCTCGTGCCCTCCTCCTCAGATCCCCAGCCCCCG TCCCGCGCCCTCGCCCTCGCCCTCGCCCTCGCCGCATTCCCATTTCCTCGAGTCGACTAC GATGGGTGCATCTGCAGCTACCGGTATGCAGATGGTGGCGGCACGCCCTTGCATCCCAGC TTGCCAGCGAATGCTTGGGTCGAAATCTGTGGTTTCTGCATTCGGAAGGGCACTCAGCAC CAGAACTGGCTTTGCAAGCTGTGTTAAGACTGCGTCAGCAGGACCGCTCATTTCTGTAAG CCACAAGAGGTTTGCCGTCAGGGCGATGTCTCAGGGAGCTGTCCAGGGCCTCCCCATTGA TCTCAGAGGTAAAAGAGCATTTATTGCTGGAGTTGCTGATGATAATGGTTATGGCTGGGC AATAGCAAAGGCTCTTGCTGCAGCTGGTGCTGAAATTCTTGTTGGTACATGGGTGCCTGC ACTGAACATATTCGAGACAAGCTTGAGACGTGGAAAGTTTGACGAATCACGGAAGCTGCC TGATGGATCCCTTATGGAGATTACTAAAGTCTACCCACTGGATGC
Homology of Contig U35_36824 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g10600.1 | 372 | 5e-79 | protein|enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed |
| Brachypodium v1_2 | Bradi1g37040.1 | 375 | 3e-56 | |
| Arabidopsis v10 | None |