barSeed - Barley Seed Development Database

Probe CUST_27729_PI390587928

Source Contig U35_36826

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27729_PI390587928	Hv_44K_v2	GAACTTCTCCCTGAATTTTAGCTGTGACCAAACTACAGCTGTTTATTCGCAAAATTAAAT	430	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.141	6.016	1.678	0.364	0.046	0.040
Raw	1715.843	1545.569	348.170	125.598	3.802	2.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC32226	570	3e-25	431 - 490	100	60 / 60	plus	ABC32226
Harvest35	U35_36826	570	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_36826 570 Hv_44K_v2
ACATTCAAACATGATGTGCCACAGATCCGAAAGCCAGATGAGAGGAAAGGCAGCACCGAT
CTTACTCCTCGCCATCCTTGTATGCCATGCGTTCTGGGCAAACGCCATCCGTCAGCCAGA
TGACTGGCACGAGATACTGCGCAAGGAGTGTAAGCTGAGCGTGTGCCATGAAATCGGAGG
ACACAAGAGTTGCTTCTGCTGCTTGGCGACGCCCGACAGTCCTTGTTGGTTCAAGGAGGA
CGAGTGCAAGAAGGCCTGCTCGCAAGTGCAGTTACCACCATCCTCCTCTGGTGGCACCAA
TCAAATAGTGCCGTGAGATGTTTGGAACAACGACAATAAGAGATCACGTCGCGTTTTTGT
TCTAAATGAATCGGTCATCTAGTGTTGTATCTCCATCCACAAAAAGGTGCAAGGAATCGA
GTCAAGAATGGAACTTCTCCCTGAATTTTAGCTGTGACCAAACTACAGCTGTTTATTCGC
AAAATTAAATTAATATCGCGCTAAACAATACCTGTATGATTTTGCAGCAATTAATACCAG
ATTTATTCAAANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_36826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None