barSeed - Barley Seed Development Database

Probe CUST_27727_PI390587928

Source Contig U35_12870

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27727_PI390587928	Hv_44K_v2	CTTTTGTAGATCTGCCTAATATTCCAGATCAGATGCATGTGTCAGCAGATGTTCAAAAAA	411	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.098	1.770	1.132	0.677	0.279	0.367
Raw	667.457	881.195	488.999	478.571	66.275	95.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64881.1	2106	3e-22	7 - 62	100	56 / 56	minus	ABC38749
JLOC1	JLOC1_42642.2	2391	1e-22	2271 - 2326	100	56 / 56	plus
JLOC1	JLOC1_42642.1	1670	1e-22	1550 - 1605	100	56 / 56	plus
Harvest35	U35_12870	482	3e-25	412 - 471	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_12870 482 Hv_44K_v2
AATTAACATGCTCATCAGCGTCAAGCCATTAACATTAACATCAAGCTAAGAAGAGTTTGC
CCAATTTCTTCATCGGTGATGCTGGCCAGTGTTTCCGTCGTCGTTCTTCACGTGTTGCTG
CTTTCATCGTCGTCAGACGGCCCCGGGCAGGCACCGGAGAAGCTGACGTTTTTGGCCTGT
TTGTGTTCATAAGGCTTTGTGGCTGGTTGGTTACCTTGGCGCGCAAAGTGTGGGGATCTT
TTTTGTAGAATCGAAGTGTAGAGATGTCTCTGCTTGCTTCAGGAAGCCAGCCTTGTAGTG
CTAGCTGTTTCACCTTTGTGTTGGTCCTTGTTTTCCTGTTTGCTAGTCGAAGTTGGTGAC
GTGATTGTAGAAAGATGTGGGTCTCGGTGGAGTTCTCCAGAGCACCATGACCTTTTGTAG
ATCTGCCTAATATTCCAGATCAGATGCATGTGTCAGCAGATGTTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_12870 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None