barSeed - Barley Seed Development Database

Probe CUST_27726_PI390587928

Source Contig U35_36829

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27726_PI390587928	Hv_44K_v2	GTGCCGCAAAGAGATTTAAAATTGTCCACTGTAGTGTTTTTAGAGGTTCATATCAACATA	421	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.144	0.313	1.021	1.598	1.045	1.418
Raw	2.958	16.579	49.194	104.837	28.132	41.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC32233	512	3e-25	422 - 481	100	60 / 60	plus	ABC32233
Harvest35	U35_36829	512	3e-25	422 - 481	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_36829 512 Hv_44K_v2
GGTGAAAGGAGAATTGCATAGTGTTCTCTACCGCTCACCGTGAACTTAGGCGATGGCAAA
TAATAGCATCCTCCAAGTCTTCACTGCTTTTCTCATCGCACAAGTCTGCTTACTCATGAC
GATGGCCGTGCCGATAGCGCTAGCAGCCGGTAGGCTTATGCGACACGATCCACCTTGTTG
TCCTAGGGACCCATATTGTTGTGGGTTCGACGGCGTGATGGCCAATGGAACTGCATCCTC
CACAAAGCCTTGATATGTGGTTTCATTCTCCTCCAAGTTATAAGCTATGTCCTGCAAAAT
GTGCTTCGACGGTGGTTGTGTTTTCATATATGCAATTTGTGTTGCTAGTTTCAAGAAATG
TTATGTATAAGCTATTTTGCTAATAAAAGTGGGAGGAGATTGTTATCTATCTTGTTGAAA
TGTGCCGCAAAGAGATTTAAAATTGTCCACTGTAGTGTTTTTAGAGGTTCATATCAACAT
ATATTCTAATGGTTAAAGACAAAAAAAAAAAA

Homology of Contig U35_36829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None