barSeed - Barley Seed Development Database

Probe CUST_27717_PI390587928

Source Contig U35_901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27717_PI390587928	Hv_44K_v2	GGCCTCGAACAGCTTCATACATGAGCTCTGCTTCTTTCCACAATTCGTTCACTGATGATA	584	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.790	3.518	0.991	0.901	0.391	0.774
Raw	597.921	710.583	172.446	262.013	37.918	82.085

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02965	871	3e-25	142 - 201	100	60 / 60	minus
Harvest35	U35_901	785	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_901 785 Hv_44K_v2
AGTTCATAATGACTCATCCAGACATCAAGATACCGCCAAAAGGAAAGATCTATTCGGTTA
ATGAAGGGAATGCCAAGAACTGGGACACGCCTACTGCAAAGTACGTTGAGAAGTGCAAGT
ATCCCACGGATGGTTCATCACCTAAATCCTTGAGATACATTGGCAGCATGGTTGCTGATG
TCCACCGCACCTTGCTATACGGCGGCATATTTCTGTACCCCGCAGACAAGAAGAGCCCGA
ACGGAAAGCTCCGTGTGATGTATGAGGTGTTCCCCATGTCATTCCTGATGGAGGAAGCTG
GAGGCCAGTCTTTCACAGGCAAAGGACGGTCGCTCGATCTGATCCCCACCGACATCCACG
AGAGATCCCCGATATTCCTCGGCAGCAGCGACGACGTGGAGGAGATCAAGGCGCTGTACG
CGGAGGAAGCCAAGAAGGCAGGATCTGCATGAAGATCCACGGTCATGTCGCGCAAGGCGT
GTAAATCGACGACGACTCATGGGCCTTGCTGGCAAATGTGATTCATATATCAGGCATTTC
TTTTCTATACGTCTGTGTCATTCAGTGTAATATACTAGCGTGGAGGCCTCGAACAGCTTC
ATACATGAGCTCTGCTTCTTTCCACAATTCGTTCACTGATGATACGAAATATACATCCAT
GTATACATGTATTCAGCTCAGGAATGGCTGTGTGCATCGTTGAGGCCGGGGGACAGAACC
AGTGCCTCGAGCTGTGCAGAATGCATTGCATATACATACAAATTGCTACATCATGTATTA
AACAT

Homology of Contig U35_901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64660.4	234	2e-88	protein\|fructose-1,6-bisphosphatase, putative, expressed
Brachypodium v1_2	Bradi2g56030.1	344	5e-95
Arabidopsis v10	AT1G43670.1	341	6e-85	Inositol monophosphatase family protein \| chr1:16468184-16470347 FORWARD LENGTH=341