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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27705_PI390587928Hv_44K_v2ACTCGTGTACTTTGTCGGAACTCTGTAATGCATGCTTACAAGCGAAATATAAGATGGTCC733GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3680.4820.6571.6421.4792.176
Raw 1418.7673011.5343496.43714156.5734178.8776784.147



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_2299.19858e-25820 - 87910060 / 60plus
Harvest21ABC032597913e-25705 - 76410060 / 60plusABC03259
Harvest21ABC032581032e-2226 - 8010055 / 55plusABC03258
Harvest35U35_9187293e-25647 - 70610060 / 60plus
Harvest35U35_9178663e-25734 - 79310060 / 60plus



Contig Sequence (866 bp)

>U35_917 866 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGACCCACTCACTCACAGTCTCTCAGCCTTCACTGACGCACC
GACTAAGCCGACAAAGCAAGCACACTAGCTAGTTTCCACCATGGCATCTCGCCGTGCCCA
CGCAGCCGCGACCATGGCACTGCTGGTGGTGGCGCTTGTGCTGTCTGGGGCACCGGCGCC
GGCGGAGGGTGCGGTTGCGAGCTGCGGTCAGGTGGTGAGCTACCTGGCGCCGTGTATCGG
TTACGCTATGGGCAGGGAGCGTGCACCTGGCGGGGGCTGCTGCACGGGCGTGCGTAGCCT
TAACGCGGCGGCTGCCACCCCCGCCGACCGCCAAGCCACCTGCACCTGCCTCAAGCAGCA
GACGAGCGGCATGGGCGGCATCAAGCCCGACCTCGTCGCCGGCATCCCCAGCAAGTGCGG
CGTCAACATCCCCTACGCCATCAGCCCCAGAACCGATTGCTCCAAGGTGCGTTAAGCGTT
GCATGGTGAGAGCGAAATAAATTGTGGAAGCCCCGTCCTTGCTAGCTATAGCTAGCAGTA
CTGTATGCGTAAAAAAAATAAAAAATCTAGCAGTACTGGATGCATGCATGGCTCCACCGC
GTTTAGTTTACTGCTTTACTAGTTCTACCGCTTTCTCATAATAAATTAGTTTTACTGCTG
CTGCCGCCGCAGCTTCGTTCGTACGTTGTGGCCGTTGTTGCCACGAGAGCTGTGATCTTG
TACTCCCGAGGGAACTCGTGTACTTTGTCGGAACTCTGTAATGCATGCTTACAAGCGAAA
TATAAGATGGTCCTTTAATAAAAAAAAAAAAAAAAAAACGCGGTCTGCACGCACCGAAAT
TCTTCTCCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None