barSeed - Barley Seed Development Database

Probe CUST_27704_PI390587928

Source Contig U35_918

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27704_PI390587928	Hv_44K_v2	ACTCGTGTACTTTGTCGGAACTCTGTAATGCATGCTTACAAGCGAAATATAAGATGGTCC	646	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.373	0.502	0.674	1.631	1.567	2.170
Raw	1363.694	2985.366	3412.820	13350.893	4208.173	6436.163

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2299.1	985	8e-25	820 - 879	100	60 / 60	plus
Harvest21	ABC03259	791	3e-25	705 - 764	100	60 / 60	plus	ABC03259
Harvest21	ABC03258	103	2e-22	26 - 80	100	55 / 55	plus	ABC03258
Harvest35	U35_918	729	3e-25	647 - 706	100	60 / 60	plus
Harvest35	U35_917	866	3e-25	734 - 793	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_918 729 Hv_44K_v2
ACCCACTCACTCACAGTCTCTCAGCCTTCACTGACGCACCGACTAAGCCGACAAAGCAAG
CACACTAGCTAGTTTCCACCATGGCATCTCGCGTGCCCACGCAGCCGCGACCATGGCACT
GCTGGTGGTGGCGCTTGTGCTGTCTGGGGCACCGGCGCCGGCGGAGGGTGCGGTTGCGAG
CTGCGGTCAGGTGGTGAGCTACCTGGCGCCGTGTATCGGTTACGCTATGGGCAGGGAGCG
TGCACCTGGCGGGGGCTGCTGCACGGGCGTGCGTAGCCTTAACGCGGCGGCTGCCACCCC
CGCCGACCGCCAAGCCACCTGCACCTGCCTCAAGCAGCAGACGAGCGGCATGGGCGGCAT
CAAGCCCGACCTCGTCGCCGGCATCCCCAGCAAGTGCGGCGTCAACATCCCCTACGCCAT
CAGCCCCGTCCTTGCTAGCTATAGCTAGCAGTACTGTATGCGTAAAAAAAATAAAAAATC
TAGCAGTACTGGATGCATGCATGGCTCCCCCGCGTTTAGTTTACTGCTTTACTAGTTCTA
CCGCTTTCTCATAATAAATTAGTTTTACTGCTGCTGCCGCCGCAGCTTCGTTTGTACGTT
GTGGCCGTTGTTGCCCCGAGAGCTGTGATCTTGTACTCCCGAGGGAACTCGTGTACTTTG
TCGGAACTCTGTAATGCATGCTTACAAGCGAAATATAAGATGGTCCTTTAATAAAAAAAA
AAAAAAAAA

Homology of Contig U35_918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None