barSeed - Barley Seed Development Database

Probe CUST_27702_PI390587928

Source Contig U35_920

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27702_PI390587928	Hv_44K_v2	TATCACCGGCTCACGAGCTAGAGCAGAGCATCCTAGACAAGAAGAGGAGAGGCACCACCA	19	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56194.1	1001	6e-24	161 - 219	100	59 / 59	plus	ABC09813
JLOC1	JLOC1_36329.1	1071	3e-24	218 - 276	100	59 / 59	plus
Harvest35	U35_920	708	3e-25	20 - 79	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_920 708 Hv_44K_v2
TCCTCGAGCACTGTTGGCCTATCACCGGCTCACGAGCTAGAGCAGAGCATCCTAGACAAG
AAGAGGAGAGGCACCACCACCCCGGCGGACGGCAGCAATGGCGGCTTCGTTCAGCTCTTC
TGTGGCGGTGGCGGTGGCGGTCATGGTGTGCGCAATGCTGGTGCAGACCTGCGTCGCCAC
GAGGCGGCTCACGGCGCTGGTGCAGGACCCGCCCATCACCATGAAGTACCACAAGGGCGC
GCTCCTCTCCGGCCGCATCGCCGTCAACCTCGTCTGGTACGGCAACTTCTCCGCGCCGCA
GCGCGCCATCGTCACCGACTTCGTCTCCTCGCTCTCCTCCGCGTCGCCGGCCGCGGCCCC
GCAGCCGGAGCCGTCCGTGGCCACCTGGTTCAAGACGGCGCAGAAGTACTACGCCAGCTC
CAAGGCCCGCTTCCCGGCCCTGGCCCTCGGCTCCCACGTCCTCGACCAGTCCTACTCCCT
CGGCAAGCGCCTCCGGGAGCGGGACCTCGTCAGGCTCGCCGCCCGCGGCGGGGCCAGCCG
CGCCATCAACGTGGTGCTCACGGCCGACGACGTGGCCGTCGACGGGTTCTGCACGAGCCG
CTGCGGCTCGCACGGTGCCTCCCCGCGGTCCCGTGCCGGCCGGTTCGCGTACGTGTGGGT
CGGCAACCCGGCGTCGCAGTGCGCCGGGCACTGCGCGTGGCCGTTCCA

Homology of Contig U35_920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52040.1	312	2e-97	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi3g58620.1	312	4e-97
Arabidopsis v10	AT1G35140.1	309	1e-52	\| Symbols: PHI-1, EXL7 \| Phosphate-responsive 1 family protein \| chr1:12852089-12853018 FORWARD LENGTH=309