barSeed - Barley Seed Development Database

Probe CUST_27701_PI390587928

Source Contig U35_921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27701_PI390587928	Hv_44K_v2	GTGTGCCTGTAGAGGCGTTGAGATGAAATTCTTTCATTTGTTGAATGAAAAAAGTTTACT	422	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.784	1.845	2.318	1.173	0.446	0.521
Raw	1006.069	3675.329	3877.950	3080.030	412.345	536.172

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364063	1167	2e-24	1108 - 1167	100	60 / 60	plus	ABC09813
MLOC	MLOC_39727.1	411	2e-24	272 - 331	100	60 / 60	plus	ABC09813
JLOC1	JLOC1_25918.1	543	8e-25	281 - 340	100	60 / 60	plus
Harvest21	ABC09813	1182	3e-25	1106 - 1165	100	60 / 60	plus	ABC09813
Harvest35	U35_921	544	3e-25	423 - 482	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_921 544 Hv_44K_v2
GGGCCGCAGACGGCGCCCCTCGCGCCGCCCAATGGCGACGTCGGCGTCGACGGCATGGTG
GTGTCGCTTGCGTCCATGATCGTCGGCACCGTCACCAACCCCTTCGGCAACGGCTTCTTC
CAGGGCCCCGCCGAGGCGCCGCTGGAGGCCGCCACGGCGTGCGCCGGCGTGTACGGCAAG
GGGGCGTACCCCGGCTACGCCGGCTCGCTGCTCGTCGACCCGGCCACCGGCGCCAGCTTC
AACGCGAACGGAGCCCACGGCCGGAAGTACCTGGTCCCGGCCCTCGTCGACCCCGACACG
TCCGCATGCTCCACCTTGGGGTAGGGCCATGACCATGATAAGTGGTGCGTAGTTATAGTT
GCGGTGGCGTTGTTACTGTGTGGAGAGTGTTCCACCTTCCACGCGCGTGCTAATATTAAT
CCGTGTGCCTGTAGAGGCGTTGAGATGAAATTCTTTCATTTGTTGAATGAAAAAAGTTTA
CTAAAAAAAAAAAAAAAAAAGCATTGTTTGGAAACTAACATTATTATCAAAAAAAAAAAA
AAAA

Homology of Contig U35_921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52040.1	312	2e-56	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi3g58620.1	312	3e-56
Arabidopsis v10	None