barSeed - Barley Seed Development Database

Probe CUST_27700_PI390587928

Source Contig U35_922

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27700_PI390587928	Hv_44K_v2	CTATGTTCTGTTGCACCATAGTTGTTGCTGGATAATTGAACTTGGATTGCATACAAAAAA	1760	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.568	1.495	1.196	0.942	0.388	0.375
Raw	562.808	829.055	576.133	702.755	103.529	107.965

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23676.1	1821	4e-23	1542 - 1602	98	60 / 61	plus
Harvest35	U35_922	1831	3e-25	1761 - 1820	100	60 / 60	plus

Contig Sequence (1831 bp)

>U35_922 1831 Hv_44K_v2
AAGTTGATTGAAGCCAGAGAGAAAAGAAAAGAGATCCGGGACAAGAACTCCGCCGCACCG
CATCCAGAACAGATCCAAACCCTCGCCGGCGACCATGGGGCAGGGCACGCCGGGCGGCAT
GGGCAAGCCGGGCGGCGCCCCGGGCGACCGCAACAAGCCGGGCGGCGACGGCGACAAGAA
GGACAAGAAGTTCGAGCCCCCCGCCGCGCCCTCCCGCGTCGGCCGCAAGCAGCGCCGCCA
GAAGGGGCCCGAGGCGGCCGCCCGCCTCCCCAACGTCGCGCCGCTCTCCAAGTGCCGCCT
CCGCCTCCTCAAGCTCGACCGCGTCAAGGACTACCTCCTCATGGAGGAGGAGTTCGTCGC
CGCGCAGGAGCGCCTCCGCCCCACAGAGGAGAAGACGGAGGAGGACCGCTCCAAGGTCGA
CGACCTACGCGGCACCCCCATGAGCGTCGGCTCCCTCGAGGAGATCATCGACGAGAGCCA
CGCCATCGTCTCCTCCTCCGTCGGCCCAGAGTACTACGTCGGCATACTCTCCTTCGTCGA
CAAGGACCAGCTCGAGCCCGGCTGCTCCATCCTCATGCACAACAAGGTTCTCTCTGTGGT
TGGAATTCTACAAGACGAGGTTGATCCTATGGTGTCTGTGATGAAAGTTGAGAAAGCTCC
GCTGGAATCATATGCGGACATTGGTGGGTTAGATGCTCAGATTCAAGAAATAAAAGAGGC
GGTTGAGCTTCCGCTGACCCACCCTGAGCTATATGAAGACATTGGAATAAGGCCACCCAA
GGGGGTCATATTATATGGAGAACCTGGAACGGGGAAAACTCTACTTGCCAAGGCTGTTGC
TAACTCCACATCTGCAACTTTCTTACGTGTTGTTGGAAGTGAACTTATTCAGAAGTACCT
TGGCGACGGTCCAAAACTAGTTAGAGAACTATTTAGAGTTGCGGATGAGCTTTCCCCCTC
AATAGTCTTCATCGATGAGATCGATGCAGTTGGAACAAAGAGGTATGACGCTCATTCAGG
AGGGGAGCGTGAGATTCAGAGAACTATGTTGGAGCTGCTGAACCAGCTAGATGGTTTTGA
CTCGCGTGGAGATGTTAAAGTTATTCTAGCTACAAATCGCATTGAAAGTCTTGATCCAGC
CTTGCTTCGCCCTGGCAGAATAGACCGAAAGATAGAATTCCCTCTTCCAGACATTAAGAC
TAGGCGGCGCATCTTCCAGATACACACGGCAAAGATGACATTGTCAGATGATGTGAACCT
GGAAGAGTTCGTCATGACTAAGGATGAGTTTTCTGGTGCTGACATCAAAGCAATATGCAC
CGAATCTGGCTTGCTTGCTTTGAGAGAGCGCAGGATGAAGGTGACACACGCCGACTTCAA
GAAGGCAAAGGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTGCCGGAGGGGCTTTACAT
GTGATGAATTGTGCACCGGTCTTCACTACCAGAACAACATTGTGTAGTGATAATATATTT
GGTATCGTGGGATATATTCCCTGGTTTGGAGGATAGGCGCAAATTTGTTTGTAACCTTTT
CTTCGCCTGAATGGTTGGATAATTGAATAGTTTGTTGTACTACGATCTGTTGACGCCTTC
CTTTCGAAGTACTGAATCATAAGCTTAAATCGCAATGGCAAGTCAGCAAAGCCGTGGCAT
TCTGGTGCTTCTTTAAAAAAAAAAAAAAAAAGCATATGTTGATGTTGAGCAAATATAAGC
TGCAACCTGATACTACATAGCTATGTTCTGTTGCACCATAGTTGTTGCTGGATAATTGAA
CTTGGATTGCATACAAAAAAAAAAAAAAAAA

Homology of Contig U35_922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g49150.1	449	protein\|26S protease regulatory subunit 4, putative, expressed
Brachypodium v1_2	Bradi1g16750.1	451
Arabidopsis v10	AT4G29040.1	443	\| Symbols: RPT2a \| regulatory particle AAA-ATPase 2A \| chr4:14312369-14314386 FORWARD LENGTH=443