barSeed - Barley Seed Development Database

Probe CUST_2769_PI390587928

Source Contig U35_10873

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2769_PI390587928	Hv_44K_v2	TATTTGCTGGGAGAAAGAAGAGATAGATCAAGAGAACAGCTCAGCACTGCGGAAAACAAA	768	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.460	1.959	1.383	0.827	0.309	0.360
Raw	263.332	503.608	340.496	323.796	40.935	52.664

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12602.1	1587	2e-24	765 - 824	100	60 / 60	plus	ABC40469
JLOC1	JLOC1_8457.1	1768	8e-25	768 - 827	100	60 / 60	plus
Harvest21	ABC23076	873	3e-25	769 - 828	100	60 / 60	plus
Harvest35	U35_10873	873	3e-25	769 - 828	100	60 / 60	plus

Contig Sequence (873 bp)

>U35_10873 873 Hv_44K_v2
CAGCCCGGCCCCGGCCCCAGCGGCGGCGGCCGCCGCGGAGGTGAGCAACGCGAGGTGCTA
CTTGGACGTGAGCATCGGCGGCGAGATGGAGGGCCGGATCGTGATGGATCTCTACGCCTC
CGTGGTGCCACGCACGGCCGAGAACTTCCGCGCGCTCTGCACCGGGGAGAAGGGCGTCAG
CGCCGCCACCGCCGCGCGGATCCACTACAAGGGTTCATCATTTCATCGTATCATCAAGGG
TTTTATGGTGCAAGGTGGAGATATAACTGCTGGTGATGGAACTGGGGGAGAGTCAATATA
TGGAGTGAATTTTGAGGATGAGAATTTTGTTTTGAAGCATGAGAGGAAAGGGATGTTATC
AATGGCGAATTCTGGTCCCAACACAAATGGATCTCAGTTTTTCATCACTACCACCCGAAC
ACCACACCTTGATGGGAAACATGTTGTTTTCGGGAGGGTTGTAAAAGGAATGGGAGTGGT
TCGCGCAATGGAGCATGTTTGTGCTGGAGAAGCTGACCTTCCAACTGCTGATATTGCTAT
TGTTAATTGTGGGGAACTGCCAGAAGGTTCAACTGAAGGAGTTGCAAATTTCTTCAAAGA
TGGCGACATGTATCCTGATTGGCCTATTGACCTCGATGAAAAGCCTGCAGACGTTCTGTG
GTGGATTAATGCTGTTGATTCTGCAAAGTCTTTTGGAAATGAAAATTTTAAGAAACATGA
TTACAAGGCTGCACTCAGAAAGTACAGAAAAGCTATGCGGTATTTAGATATTTGCTGGGA
GAAAGAAGAGATAGATCAAGAGAACAGCTCAGCACTGCGGAAAACAAAGTCAATTATACT
CACAAATAGTTCTGCATGCAAACTGAAGCTGGG

Homology of Contig U35_10873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52360.1	404	3e-162	protein\|peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
Brachypodium v1_2	Bradi3g58197.1	391	2e-175
Arabidopsis v10	AT2G15790.1	361	7e-141	\| Symbols: SQN, CYP40 \| peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase \| chr2:6878144-6880743 REVERSE LENGTH=361