- Probe CUST_27696_PI390587928
- Source Contig U35_926
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27696_PI390587928 | Hv_44K_v2 | CAACATGGAAATTGTTACGGAGATTTATCCTCAGCTCAACACATCTTTGGAGGGGTCTGT | 637 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.327 | 1.134 | 1.181 | 0.836 | 0.840 | 0.744 |
| Raw | 186.275 | 212.577 | 223.826 | 214.400 | 87.056 | 84.983 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355087 | 3136 | 3e-22 | 603 - 661 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.5 | 3741 | 3e-22 | 858 - 916 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.6 | 3607 | 3e-22 | 724 - 782 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.10 | 3391 | 3e-22 | 494 - 552 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.9 | 3493 | 3e-22 | 720 - 778 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.8 | 1588 | 3e-22 | 723 - 781 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56296.3 | 3436 | 3e-22 | 743 - 801 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.7 | 3604 | 3e-22 | 721 - 779 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.4 | 3795 | 3e-22 | 861 - 919 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.1 | 3761 | 3e-22 | 758 - 816 | 98 | 59 / 60 | plus | ABC03646 |
| MLOC | MLOC_56296.2 | 3774 | 3e-22 | 758 - 816 | 98 | 59 / 60 | plus | ABC03646 |
| JLOC1 | JLOC1_36396.6 | 3766 | 1e-22 | 707 - 765 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36396.5 | 3787 | 1e-22 | 844 - 902 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36396.4 | 3625 | 1e-22 | 844 - 902 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36396.3 | 3496 | 1e-22 | 715 - 773 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36396.2 | 3919 | 1e-22 | 860 - 918 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36396.1 | 3685 | 1e-22 | 742 - 800 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03648 | 699 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03647 | 1937 | 5e-23 | 665 - 723 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_926 | 700 | 3e-25 | 638 - 697 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_924 | 3410 | 5e-23 | 665 - 723 | 98 | 59 / 60 | plus |
Contig Sequence (700 bp)
>U35_926 700 Hv_44K_v2 GAAAGAAAAACCTCGCTCGCTCTCGCGACCGAAACGCGACGGCGCGAGCTTATCTCCTTA TCTCTCCGACGACCAGGAGCAGCGGATCCACTTCGGAGATCCAGCCCGACCCGGCGGCGC GGCGTTCCTCCTCCTCCTCCTTCGACCAAGTATCAAAGATTGCCTTTCTCCTCTTCAAAG AGGGGTTCCCCAGGGAACAAGGACTCTGGCTACCGCGCTAATTTAACAAAGGAGGGTTCA CACTGGACAGGAACAAGGTCCAATTCCTTGTTGTCATTACATAGTTCAAAGTCTGTCAGC AAGAGGACAGCTTGTTTGACTGCAACAGAGCCACCTCCTGCTGCAGCCGAAGAACCAGAG ATGGACCTTCCGAAGGAGATATTCTTGAAAGACTACAAAAAACCCGACTACTTGTTTGAC ACGGTGGATTTAGAATTTCAACTTGGTGATGAAAAGACCATAGTCACTTCTACATAGCTG TATCTCCAGGCAATGAAGGCACCTCATCTCCACTCGCTCTTAACGGACGTGATCTAAAGC TGTTATCAATCAAAATCAATGGCACAGAGCTGAAGAGTGACAAGTATACAGTTGATCCAC GCCATCTGACAATTTTGACACCACCTGCTGGTGTATTCAACATGGAAATTGTTACGGAGA TTTATCCTCAGCTCAACACATCTTTGGAGGGGTCTGTACA
Homology of Contig U35_926 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |