barSeed - Barley Seed Development Database

Probe CUST_27688_PI390587928

Source Contig U35_934

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27688_PI390587928	Hv_44K_v2	ACATTAAGCTGCAATCCTGAATTGGCTAAAAATGAACGAGGGTCTTCGATCTTTCTGTTG	818	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354136	1412	2e-24	701 - 760	100	60 / 60	plus	ABC02379
Harvest21	ABC02391	1205	3e-25	819 - 878	100	60 / 60	plus
Harvest35	U35_934	1199	3e-25	819 - 878	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_934 1199 Hv_44K_v2
CCCACTCGACCCACCCACGGCCACCACCGATGATGTCCATCACCTCCACCACCGGGACCC
CACTCTCCAGGGGCGGACAGCGCGTCTCCAGGGGCGGACAGCGCGGAGGCAGGTGCGCCG
TCCGAGCCCAAGCGGCCGGAGACGGGGGAGCGGCGGATTCGTCCTAGCAGAAGTCTGTGG
AGATAATGCGCAAGTTCTCGGAGCAGTACGCCCGGCGCTCCAGCACCTTCTTCTGCTCCG
ACAAGTCCGTCACCGCCGTCGTGATCAAGAAGAAAAAACCTCTTTTGTGCACGGGCTTGC
TGACCACAAGGATCAACTCGGAGCTCCTCTATGCCCCTGCAGGCATTATGACGACAAGGC
CGCCGATGCGGCCCAAGGCTTCTGGAACTGCCCGTGCGTACCTAATTTCAAAATCAGATT
TTTCTATTCGCTGTTGCAAAGGAGTCCTCGAAATTCCTGCCCATCTTGAAGGAAACAACA
AAATCATTAAAGGGAAAGGTACTTTGTTCTCTTGATCGGACCAGTATTTCATGAACTTTT
TCCTCTGTCATGTTCCACGTTTTATACTCAAATCCAAGCCATCCCTTATTTCCTTTGTGG
CTCGAGCGTTTTTGCTGAGGTGGAGTCTCACTAAGAAGTGATGTGGCCTATGTCTCAAAT
GCATCTTTTATTTGTTTTTGTGGAGCGTGACAATGAGGAAGTTGGTGAACCTGTTGCCAA
TTACTTTGGAATTACTGGACAAGAGACCACGGTTCTTGCTTACACTGGGAATGAAGACTC
TAAGAAGTTTTTCTACAGTGGTGAAATATCACTGGACAACATTAAGCTGCAATCCTGAAT
TGGCTAAAAATGAACGAGGGTCTTCGATCTTTCTGTTGTGAAGCGTTCTAATTTTGTTCG
CTATGGCCTGGGTTGTTTGGAGAGGTTGGATGATCAAGGTGATAACTGTGCAAAGGACAT
CCGTTCAAATTTGGGGATTATGGTTGCTGGAGGTGATGGCACTGTTGGTTGAGTATTTGG
ATGTCTCCAAGAACTTAATAAGTCGAAAAGGAAACCAGTTCCTCCCACAAGAATCATTCC
ACTTGGGACAGGAAATGACCTCGCTAGATCATTTGGATGGGGTGGCTTTTTCCCCTTTGG
TTGGCATTCAGCTGTAAAGCGATATCTCAAGAAGGCCGTTTCTGCTTCGGCCGCCATCT

Homology of Contig U35_934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None