barSeed - Barley Seed Development Database

Probe CUST_27684_PI390587928

Source Contig U35_938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27684_PI390587928	Hv_44K_v2	AAACGTCGTCGTCCTGATGCTTCATTTTTCTTCCTGAGTGAATGAATGGTGTGTGGAAGG	413	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251450.1	994	2e-24	845 - 904	100	60 / 60	plus	ABC02379 ABC02399
MLOC	MLOC_7761.2	1104	2e-24	1018 - 1077	100	60 / 60	plus	ABC02379 ABC02399
MLOC	MLOC_7761.1	810	2e-24	689 - 748	100	60 / 60	plus	ABC02379 ABC02399
JLOC1	JLOC1_5123.1	2741	8e-25	689 - 748	100	60 / 60	plus
Harvest21	ABC02399	500	3e-25	414 - 473	100	60 / 60	plus	ABC02399
Harvest35	U35_938	500	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_929	919	3e-25	828 - 887	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_938 500 Hv_44K_v2
GCACGAGGGCGTCCCCATGCGAGAAAGGAAGGAGTGCCATTGCATGCTTTTCCTTACGCC
CGACAACGATTTTGCCGGAGAGGACCAGGCCATCAGCTTGGAGGAGATCAAGGAGGCGAC
GTCCAAGTACTAACCAGACAACGCCTGTTTTTGCTCGAGAGGGGGCTATAGTCGGTCGGT
CGGTCGGTCGTCGTTGTCGGACCTGTATATGTAGTATCTCTGTAACAGCAGCAGGAAAAT
AAAAATGTGTGTCTGGAATGATGTCTGGTGTCATCCGCCTCGAGGGAAATTAAGGCCTGA
TGGTTGCATTCCCCGGCTTGTCAATGTTACCAAATTTATTGCGTGTTTTTGGGCTCGCGT
AAACCCTACTCCATTGTGATAGGAAGGAAGCAAGGAAGGAAGGATGTCGTGTGAAACGTC
GTCGTCCTGATGCTTCATTTTTCTTCCTGAGTGAATGAATGGTGTGTGGAAGGGAAGCAN
ANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None