barSeed - Barley Seed Development Database

Probe CUST_27674_PI390587928

Source Contig U35_948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27674_PI390587928	Hv_44K_v2	CTAAGGCCTGGTCGTATCGATAGGAAGATCGAATTTCCAAATCCTAATGCAGATTCCCGT	1054	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69344.1	2064	2e-24	1070 - 1129	100	60 / 60	plus	ABC03527 ABC03528
MLOC	MLOC_69344.2	1702	2e-24	309 - 368	100	60 / 60	minus	ABC03527 ABC03528
JLOC1	JLOC1_45934.1	2027	8e-25	1175 - 1234	100	60 / 60	plus
Harvest21	ABC03528	1542	3e-25	1055 - 1114	100	60 / 60	plus	ABC03528
Harvest35	U35_948	1575	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1575 bp)

>U35_948 1575 Hv_44K_v2
GACCAAACGTGCCGGAAAAGAAAGCTCCCCTCGAACCCGAGCAGACTCGAGCCACCTACA
GAGCGGCGGAGCAGACGAGGGTGCCCCGATGGCGGCGGTGGCGATGGACATCGCGAAGCC
CTCGGCGCTTCCGGCGAGCGTCGACGACCCGTCGGCGGCGTCGGCCAAGGGCAGGGCCGG
CGGCGGGGAGGGGCTGCGCCAGTACTACCTGCAGCACATCCACGACCTGCAGCTCCAGAT
CCGGACCAAGACGCACAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCTCG
CGTTAGAATGCTCCGGGAAGAGTTGCAGCTGCTTCAAGAACCGGGCTCATATGTTGGCGA
GGTTGTGAAGGTTATGGGCAAGTCAAAGGTTCTAGTCAAGGTTCATCCAGAAGGCAAATA
TGTCGTTGATCTTGATAAAAGTATTGATATTACAAAGATAACCCCTTCAACAAGAGTTGC
TCTTCGGAACGACAGCTACATGCTTCACCTTATCCTGCCCAGCAAAGTCGATCCACTGGT
TAATCTTATGAAGGTGGAGAAGGTTCCTGACTCTACCTACGATATGATTGGTGGGCTTGA
TCAGCAAATTAAAGAGATCAAGGAGGTGATTGAGCTTCCCATTAAGCATCCTGAGCTGTT
CGAGAGTCTCGGAATTGCCCAACCAAAGGGCGTCCTTCTATACGGGCCTCCAGGTACGGG
GAAAACATTACTTGCTCGTGCAGTTGCTCATCACACCGACTGCACCTTCATCAGGGTGTC
AGGTTCTGAGTTGGTTCAGAAGTATATTGGAGAGGGTTCCCGGATGGTCCGTGAACTCTT
TGTGATGGCTAGGGAGCATGCACCATCCATTATATTTATGGATGAAATAGACTCTATTGG
ATCTGCTAGAATGGAGTCAGGATCCGGCAACGGTGATAGCGAGGTTCAGCGTACTATGCT
TGAGCTTCTGAACCAACTTGATGGTTTTGAAGCATCGAACAAAATTAAGGTTCTTATGGC
AACAAATAGGATAGACATATTGGATCAAGCTCTTCTAAGGCCTGGTCGTATCGATAGGAA
GATCGAATTTCCAAATCCTAATGCAGATTCCCGTGGTGATATTTTGAAGATTCATTCAAG
GAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAAATTGCCGAGAAGATGAACGGAGC
ATCAGGAGCAGAGCTAAAGGCGGTCTGCACAGAAGCTGGAATGTTTGCGCTCCGTGAGAG
AAGGGTGCACGTCACCCAGGAGGATTTCGAGATGGCTGTGGCGAAGGTGATGAAGAAGGA
TACTGAGAAGAACATGTCGCTGCGGAAGCTATGGAAGTGAGGCCCTCGTTTTAGCGTCCC
TGCTTTCGCCGGCATGTACCCGTGGTTTAAGCTTATAGCGGCACATTTGCCAGATGAGCT
GCGGATTTCTTGAATTGTGTCGAGAACTGTAACTTGCAGTGCCGTGCAGCTGCCTCATCA
AGGTTAAATTTCTTTATTGGGTTAAAAAAAAAAAAAAAAAAACCGTTCGCTTGCTTGTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g11050.1	425	protein\|26S protease regulatory subunit, putative, expressed
Brachypodium v1_2	Bradi1g36830.1	423
Arabidopsis v10	AT5G19990.1	419	\| Symbols: RPT6A, ATSUG1 \| regulatory particle triple-A ATPase 6A \| chr5:6752144-6754918 FORWARD LENGTH=419