barSeed - Barley Seed Development Database

Probe CUST_27670_PI390587928

Source Contig U35_952

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27670_PI390587928	Hv_44K_v2	TTGCAGCCGTGGCTGTGTTGTGAACCTGTTTGTTTATTTATTTATTCCTTCCGTAAAAAA	1637	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.946	1.625	0.958	0.875	0.441	0.635
Raw	825.822	1085.567	569.556	825.051	142.433	228.960

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15823.1	1697	9e-22	1630 - 1684	100	55 / 55	plus	ABC03527 ABC03528
JLOC1	JLOC1_10871.2	1733	5e-22	1621 - 1675	100	55 / 55	plus
Harvest21	ABC03527	1678	1e-23	1608 - 1667	98	59 / 60	plus	ABC03527
Harvest35	U35_952	1709	3e-25	1638 - 1697	100	60 / 60	plus

Contig Sequence (1709 bp)

>U35_952 1709 Hv_44K_v2
ATCTAGACCCAGCCCAAACAACCCTCTCCGCTTCCGGCCCGAGGAGAAAAAAAAAACTTT
CTTCTTCCGCCGCAAGAAGAAGAGGCCGAGGAATAAAGCTTTCGTCGAGCGCAGGGAGAA
GAAACCCAACCAAACCCCGGGGATGGCGACGGTGGCGATGGACATCTCGAAGCCCCCGCC
GGCCGCGTCCGGCGACGAGTCGGCCAAGGGCGCGCGTGGCGGAGGGGAGGGGCTGCGGCA
GTACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGCCAGAAGACCCACAACCT
CAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGTTAGAATGCTCAGGGAAGA
GCTACAGTTGCTCCAAGAGCCTGGCTCTTATGTTGGTGAGGTGGTGAAGGTCATGGGCAA
ATCAAAGGTTCTAGTCAAGGTGCATCCAGAAGGCAAATATGTAGTAGATATTGATAAGAG
CATCGATATTACAAAAATCACACCTTCGACAAGAGTTGCTCTTCGGAATGATAGCTATAT
GCTTCATTTGGTTCTACCAAGCAAAGTTGATCCACTGGTCAACCTTATGAAAGTTGAGAA
GGTCCCGGATTCCACGTATGATATGATTGGAGGTCTTGATCAGCAAATCAAGGAGATCAA
AGAGGTCATTGAGCTTCCTATCAAACATCCTGAGTTATTTGAGAGCCTTGGAATTGCCCA
GCCAAAGGGTGTCCTCCTTTATGGACCACCAGGGACAGGCAAAACATTACTGGCACGTGC
AGTCGCTCATCACACCGACTGTACCTTCATCAGGGTATCTGGTTCCGAGTTGGTTCAGAA
GTATATTGGTGAGGGCTCCCGGATGGTTCGTGAACTCTTTGTTATGGCTAGGGAGCATGC
ACCATCTATTATATTCATGGATGAAATAGACTCCATTGGATCTGCTAGAATGGAGTCTGG
AACTGGCAACGGTGATAGTGAAGTGCAACGGACCATGCTTGAGCTGCTAAACCAACTTGA
TGGTTTTGAAGCATCAAACAAAATTAAGGTTCTGATGGCAACAAACCGGATAGACATCTT
GGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAA
TGAGGATTCACGAGGTGACATCTTGAAGATTCATTCAAGGAGGATGAACTTGATGCGTGG
AATTGATCTGAAAAAGATTGCGGGAAAGATGAATGGCGCTTCAGGAGCTGAGCTAAAGGC
GGTGTGCACCGAAGCCGGAATGTTTGCTCTCCGCGAGAGAAGGGTGCACGTAACGCAGGA
GGACTTTGAGATGGCGGTGGCCAAGGTGATGAAGAAGGACAATGAGAAGAACATGTCCTT
GCGGAAGCTGTGGAAGTGAGGACCCGAGCTTTCTCCGCCTTGCTGAAGCTGTGAAAGCGT
GTAACTGCACGTTGCTGGACTTGTATTTTTTAACTTGTGTCGTTCCATGGTTAACAAAGT
TTTTAAGATCCGCATGTGGTAGCATAATTAACTACGTATAATGTTTGATGATCGAACTAG
TTGAATTAAAAAAAAAAAAAAAAACGCAATCTGCCTGCCTATGGTCGTTTCTCTTACCAC
GCGTATAGACGTACGAGTTGCAGCCGTGGCTGTGTTGTGAACCTGTTTGTTTATTTATTT
ATTCCTTCCGTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g11050.1	425	protein\|26S protease regulatory subunit, putative, expressed
Brachypodium v1_2	Bradi3g07700.1	419
Arabidopsis v10	AT5G19990.1	419	\| Symbols: RPT6A, ATSUG1 \| regulatory particle triple-A ATPase 6A \| chr5:6752144-6754918 FORWARD LENGTH=419