barSeed - Barley Seed Development Database

Probe CUST_27656_PI390587928

Source Contig U35_16806

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27656_PI390587928	Hv_44K_v2	CAAAATTATAGCATTGCCCCGAGTGAAATGTGCCAGTAATACATTATCTCTAAGCTAAAA	1147	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.092	0.585	1.821	2.169	1.005	1.070
Raw	43.335	433.316	1169.908	2181.694	363.066	412.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35812.1	1109	4e-23	994 - 1050	100	57 / 57	plus
Harvest21	ABC06138	1220	3e-25	1148 - 1207	100	60 / 60	plus	ABC06138
Harvest35	U35_16806	1220	3e-25	1148 - 1207	100	60 / 60	plus

Contig Sequence (1220 bp)

>U35_16806 1220 Hv_44K_v2
GGACAGACCGTTCTAACCTTATCTCTTCCTCATTATGGATAAGCATTCCATATCCCTTGC
AATGGGGAGCACCAACATTCAATGCAGATCATGCATTTGGCATGATGGCCGCAGTGATGG
TGTCGCTAATAGAGTCAACTGGTGCATTCAAGGCTGCTGCCCGGTTGGCAAGTGCAACAC
CACCACCAGCATATGTCCTCAGTAGAGGCATCGGGTGGCAGGGAATTGGTACCCTACTGG
ATGGGCTATTCGGCACTGCAACTGGCTCTACTGTTTCTGTTGAGAATGTAGGTCTTCTTG
GGTCTACAAGGATTGGCAGCAGGAGAGTGATACAAATTTCTGCTGGTTTCATGATCTTCT
TCTCCATACTAGGAAAATTCGGGGCACTTTTTGCTTCCATTCCGTTCACAATATTTGCTG
CCATATACTGTGTTATGTTTGGCATTATTGCGGCGGTGGGGCTATCCTTTCTGCAGTTCA
CCAACATGAACTCTATGCGCAACCTCTTCATTGTTGGTTTTTCACTCTTTCTTGGCTTAT
CTATACCAGAGTACTTTTCTCAGTACATGACAGGTGTTCAAAATGGCCCGGCGCACACCA
AGGCTGGATGGTTCAATGACTACATCAACACCATCTTCGCGTCCCCGCCGACTGTCGCTC
TCATCATTGCTGTAGTCCTTGACAACACGCTGGATGTCAGAGACGCGGCGAAGGACAGGG
GGATGCAATGGTGGGAGCGGTTCCGGACATTCCGAGGGGACAGCAGGAACGAAGAGTTTT
ACACCCTGCCCTTCAACCTCAACAGGTTCTTCCCACCATCTTGAGCAAAAGCTTTCAAAG
TCCGGGCACTGCAAGCAGAGTACCAGATGAAGAAACCTTTGCGTCGCAACATGGCATGCT
TCTGATAGAGTAGAAGAGGAGAAGAAAAGTAGAGACGATAAGACCAGCTTGCCGTTTCAA
TAGCAAAGGATGGAGGAATTTCCCTTCGAGCTGTCTGGTTGTACATAGATATTTGTTTCC
GTAGACAATGAATTAATCCTAGTTTTTGCTGTTTGCATTGTAAGATCTCATGAAACATTT
GCGGACAAATGAGGCAAATTGTTAGCTGTAGTTGAACCCACCGTAGAAAAGGGTATTCCA
AACAAGCCAAAATTATAGCATTGCCCCGAGTGAAATGTGCCAGTAATACATTATCTCTAA
GCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16806 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g15170.1	526	6e-166	protein\|nucleobase-ascorbate transporter, putative, expressed
Brachypodium v1_2	Bradi4g27960.2	479	1e-167
Arabidopsis v10	AT2G34190.1	524	8e-150	Xanthine/uracil permease family protein \| chr2:14437065-14439407 FORWARD LENGTH=524