barSeed - Barley Seed Development Database

Probe CUST_27655_PI390587928

Source Contig U35_960

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27655_PI390587928	Hv_44K_v2	GTGTCGAGGATCGATTCTTTTGTCAGATTTTGAGTTAAACGAGTGTAATAGTTTGATGAT	2081	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248526.1	2183	2e-24	2088 - 2147	100	60 / 60	plus	ABC02888
MLOC	MLOC_11548.3	2002	2e-24	1894 - 1953	100	60 / 60	plus	ABC02888
JLOC1	JLOC1_7654.2	2376	8e-25	1877 - 1936	100	60 / 60	plus
JLOC1	JLOC1_7654.1	2856	8e-25	2357 - 2416	100	60 / 60	plus
Harvest21	ABC02888	2182	3e-25	2082 - 2141	100	60 / 60	plus	ABC02888
Harvest35	U35_960	2192	3e-25	2082 - 2141	100	60 / 60	plus

Contig Sequence (2192 bp)

>U35_960 2192 Hv_44K_v2
CAGATTCCATCCATCCATCCGTCCGTCCACGAGATTAAAAAAAAGAAGGACGAGAGCTCG
ATTCAAACCAGGTCTCGTGTTACGTATCGCGCTCCTTCCGTCCGTGCGTTTCCGATTCCG
AGGCCGAGAGTTTGAGGAGATGGCCGGCGGCGGTGTCGAGGACGCCTACGGCGAGGACAG
GGCCACCGAGGAGCAGCTCGTCACGCCATGGTCCTTCTCCGTCGCAAGCGGGCACTCGCT
GCTGAGGGACCCCCGGCATAACAAGGGGCTGGCCTTCTCCGAGGCGGAGCGCGACGCGCA
CTACCTCCGGGGCCTCCTCCCCCCGGCCATCGTCTCCCAGGAGCACCAGGAGAAGAAGAT
CATGCACAACCTCCGCCAGTACACCGTGCCCCTCCAGCGCTACATCGCCATGATGGACCT
CCAGGAGAGGAACGAGAGGCTCTTCTACAAGCTCCTCATCGACAACGTCGAGGAGCTGCT
CCCCGTCGTGTACACGCCCGTCGTCGGCGAGGCCTGCCAGAAGTACGGCAGCATCTACCG
CCGCCCGCAGGGGCTCTACATCAGCCTCAAGGACAAGGGCAAGGTGCTTGAGGTGCTCAA
GAACTGGCCTGAGAGGAGCATCCAGGTCATCGTCGTCACCGACGGCGAGCGCATTTTGGG
CCTCGGAGATCTGGGTTGCCAGGGTATGGGGATTCCGGTTGGCAAGCTGTCTCTGTACAC
CGCCCTCGGAGGAGTTCGCCCATCAGCTTGCCTGCCAATTACGATCGATGTTGGCACCAA
CAACGAGACATTGCTCAACGACGAGTACTACATCGGGCTCCGTCAACGGCGTGCTACCGG
CGACGAATACCATGAGCTTCTTCAAGAGTTCATGACCGCAGTCAAGCAAAACTACGGCGA
GAAAGTCCTGGTCCAGTTTGAGGACTTTGCCAACCACAATGCATTCGATTTGCTCGCAAA
GTACAGCAAGAGCCATCTCGTCTTCAATGATGATATCCAGGGCACAGCATCAGTGGTCCT
CGCAGGCCTCTTGGCGGCGCTCAAGGTGATCGGTGGAGGCCTTGTGGATCAGACTTACCT
CTTTCTTGGTGCTGGAGAGGCTGGAACTGGCATTGCAGAACTCATTGCGCTTGAGATGTC
CAAACACACTGATCTCCCTGTCGACGACTGCCGCAAGAAGATCTGGCTGGTGGACTCGAA
GGGTCTGCTTGTGGAGTCTAGAAAAGAGTCTCTGCAGCACTTCAAGAAGCCGTTCGCTCA
TGAGCATGAAGAACTGAAGACCCTGCTGGAGGCCGTCCAGTCCATCAAGCCAACCGTGCT
GATCGGAACATCTGGCGTCGGGAAGACCTTCACCCAAGAAGTGATCGAGGCCATGGCCTC
CTTCAACGAGAAACCTGTCATCTTCTCGCTGTCGAACCCGACGTCGCACTCGGAGTGCAC
GGCCGAGGAAGCCTACACCTGGAGCAAGGGCACCGCCGTGTTCGCGAGCGGGAGCCCGTT
CGACCCCGTGGAGTACGAGGGGAAGACGTACGTGCCCGGGCAGTCCAACAACGCCTACGT
GTTCCCCGGGTTCGGGCTCGGCGTCGTCATCTCCGGCGCCATCCGCGTCCACGACGACAT
GCTCCTCGCCGCCTCGGAGGCGCTGGCGGAGCAGGTGACCCAGGAGAACTTCGACAAGGG
GCTCATCTTCCCGCCCTTCACCAACATCCGCAAGATCTCGGCCAACATCGCCGCCAAGGT
GGCCGCAAAGGCCTATGACCTGGGCCTGGCGAGCCGGCTGCCGCGGCCCGACGACTTGGT
CAAGTACGCCGAGAGCTGCATGTACACCCCGCTCTACCGCAGCTACAGGTGAGCGTGGCG
GCAGCCTTGCGGTGCGGCGAGGACGGAGCCAACCAATAAAATCAAATTCCCCTCCCCATA
TGCCAGCTCAAGCTTCACCGACGCAACCTAAAACATAGGCTTGTTTTCTTCTGTGTCCGT
CTATGCGTATGTATACTCTTGTGGTGTTCTACTTTACTCTACTCTACTCTACTCTACTCT
ACTCTACTGTTTACGGGAGCACGGCATGCGCCTGTCTATCTGTGTCGAGGATCGATTCTT
TTGTCAGATTTTGAGTTAAACGAGTGTAATAGTTTGATGATTTGTGTCAAAAAAAAAAAA
AAAAAATTTGTGTCACCAGGATTGCTCATTCA

Homology of Contig U35_960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g09440.1	571	protein\|NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g33450.1	571
Arabidopsis v10	AT5G25880.1	588	\| Symbols: ATNADP-ME3, NADP-ME3 \| NADP-malic enzyme 3 \| chr5:9024549-9028260 FORWARD LENGTH=588