barSeed - Barley Seed Development Database

Probe CUST_27652_PI390587928

Source Contig U35_16808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27652_PI390587928	Hv_44K_v2	TTCTTCCATGTTGTATGTGCACACGTCTATCATTTGGAAAGTTTGCAGATCCATAAAAAA	1114	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.057	2.262	1.230	0.598	0.150	0.151
Raw	1240.160	2121.839	1020.049	804.945	68.147	75.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62278.1	4456	9e-22	2813 - 2867	100	55 / 55	plus	ABC12495 ABC36881
MLOC	MLOC_62277.1	2969	9e-22	1231 - 1285	100	55 / 55	plus	ABC12495 ABC36881
JLOC1	JLOC1_40744.1	2626	5e-22	1889 - 1943	100	55 / 55	minus
JLOC1	JLOC1_40743.1	3173	5e-22	1136 - 1190	100	55 / 55	plus
Harvest35	U35_16808	1183	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1183 bp)

>U35_16808 1183 Hv_44K_v2
CGCCAAGTCGCCAGTATTCCCCACCCTCCCTCCACGAGAGAAGACGGAGCACGGAGAAAG
CGAACGGCCGCGGCGATGCTCTACATAGTCGGCCTCGGCCTTGGCGACGAGCGCGACATC
ACGGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACC
TCCCTCCTCTCTCTCGGCCTCGACCCCGCCTCGCTCGCCAACCTCGAGAAGATGTACGGC
AAGGAGATCACGGTTGCCGACCGCGAGATGGTAGAGGAGCGCGCGGACCAGATGCTGAGC
GAGGCCGCGGACGCCGACGTCGCCTTCCTCGTCGTTGGCGACCCGTTTGGGGCGACCACA
CACACTGATTTGGTTGTTCGTGCCAAGAACATGGGGGTAGAGGTTAAGGTTATCCACAAT
GCATCTGTCATGAATGCTATTGGCGTTTGTGGGTTGCAACTTTACCGCTATGGAGAGACC
ATCTCTATACCTTTCTTCACAGAGACATGGAGACCAGATAGTTTCTACGAGAAAATTCAG
AACAGTCGTCGACTTGGCTTGCATACTCTTTGCCTACTAGACATCCGTGTTAAGGAGCCA
ACACTTGAGTCCTTATGCAGAGGAAAGAAAGTGTACGAACCAGCAAGATTCATGACTGTG
AACACTGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCATGGGGGATCTGCATATGGT
CCAGATTCACTATGTATGGGTGTAGCTCGCCTTGGAAGCGATGATCAGAAGATTGTGGCT
GGCCCCATGAAGAAATTACTAGATGTTGATTTTGGACCACCCCTTCACTGTCTCATTATA
GTGGGAGAGACTCACCCTGTGGGACAAGAGATGCTAGAATTCTACATGATCAAGTAGTGA
TGAGCTTTCATATGAGGAACCTGTAATCTAGATGCATGGTCCCCTTATGAAGAAAAGAAG
CTCTCTTGAAGCGTGGATATTTGCTGAATTTTGCACTCGGAAGTGTCCACCAGGAGTTTG
CTGCTGCCTGCTGTATCGGTTACTCGTCCACCGAATAGAACAGACCTTGGTTACTCATTC
GCAAACATTGATCATAATACGCCGAATTATCTTCTTCTTCCATGTTGTATGTGCACACGT
CTATCATTTGGAAAGTTTGCAGATCCATAAAAAAAAAAAAAAA

Homology of Contig U35_16808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g23970.2	275	0.0	protein\|diphthine synthase, putative, expressed
Brachypodium v1_2	Bradi1g62230.1	274	0.0
Arabidopsis v10	AT4G31790.1	277	5e-148	Tetrapyrrole (Corrin/Porphyrin) Methylases \| chr4:15377479-15378530 FORWARD LENGTH=277