barSeed - Barley Seed Development Database

Probe CUST_27646_PI390587928

Source Contig U35_19534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27646_PI390587928	Hv_44K_v2	GGCTCTGTGTTGTAGACTCGCTGGTAGAATAATGATGACATCAAAATCTAATACTAAAAA	660	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39433.1	718	3e-22	85 - 140	100	56 / 56	minus	ABC11814
JLOC1	JLOC1_25709.1	935	1e-22	589 - 644	100	56 / 56	plus
Harvest21	ABC11813	517	5e-23	446 - 501	100	56 / 56	plus
Harvest21	ABC11814	825	2e-21	654 - 709	98	55 / 56	plus	ABC11814
Harvest35	U35_19534	732	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_19535	825	2e-21	654 - 709	98	55 / 56	plus

Contig Sequence (732 bp)

>U35_19534 732 Hv_44K_v2
CTCTCGGCCGAAACCAACCCCAGCGGAGGAGCGAGCGGCGGCGGCGGCGGCGGCGATATG
CAGTTCGTCCGAGGCGTGGGCGGCGGCGGCGGGGGAGGAGGAGGGGCGTGGGAGGTGCTG
AGGAGGCATTTCTCGCGGAAGCGGGCGGTGGACATCCGGCGGATCAACCCCAAGGTGCCC
AAGGAGGAGGCCGTGGCCATCTCCGGCCGCCTCCTCCAGATCCTCGCCGACAACGGGCCC
CTCACCGTCGGCAACACCTGGAACCACGCCAAGGATGCTGCGATCGACGGCCTGAACAGC
AAGACCCACATGAAGGTCTTGCTCAAGTGGATGTGGGGGAGGAGGATCATCAAGCTCTCG
TGCACGCAGGTGGGCAACACCAAGAAGTTCCTCTACTCCCCGTTCACCGCCGACGACGCC
GAGGCGACCGAGGAGCCAGCAGAGGAGCAGCCGAAGAAGAAAGGGTGGAAGGGGAAACAC
CCAAAGTACCAGACCAAGAAACAGCCGGCGGCAGCGGCTTGACTCTGGTCCGCTGCAAGC
ACTCCTTCGGGCATTTTCCTGCTGCCGTTGTTTCTTTTCTGTTTTACTTAGAACAGAAGA
AAAGATTTCGTGATGGACCATTTGGGTTGCCGCAAATTTCGCTGGCAGGCTGGTTTGCTG
GGCTCTGTGTTGTAGACTCGCTGGTAGAATAATGATGACATCAAAATCTAATACTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_19534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63550.1	159	2e-56	protein\|expressed protein
Brachypodium v1_2	Bradi1g01320.1	162	5e-64
Arabidopsis v10	None