barSeed - Barley Seed Development Database

Probe CUST_27645_PI390587928

Source Contig U35_19535

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27645_PI390587928	Hv_44K_v2	AAAGGAGGATCTGTTAGCGTAAGGTGAACAAATGGGTCCTTCCTCTTTGTGTGTAAAAAA	754	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.431	1.454	1.011	1.030	0.614	0.796
Raw	3125.523	4840.573	3036.480	4853.157	1021.475	1425.683

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251256.1	860	7e-23	786 - 846	98	60 / 61	plus	ABC11814
Harvest21	ABC11814	825	3e-25	755 - 814	100	60 / 60	plus	ABC11814
Harvest35	U35_19535	825	3e-25	755 - 814	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_19535 825 Hv_44K_v2
CCGAAACCAACCCCAGCGGAGGAGCGAGCGGCGGCGGCGGCGATATGCAGTTCGTCCGAG
GCGTGGGCGGCGGCGGCGGCGGCGGGGGAGGAGGAGGGGCGTGGGAGGTGCTGAGGAGGC
ATTTCTCGCGGAAGCGGGCGGTGGATATCCGGCGGATCAACCCCAAGGTGCCCAAGGAGG
AGGCCGTGGCCATCTCCGGCCGCCTCCTCCAGATCCTCGCCGATAACGGGCCCCTCACCG
TCGGCAACACCTGGAACCACGCCAAGGATGCTGCGATCGACGGCCTCAACAGCAAGACCC
ACATGAAGGTCCTGCTCAAGTGGATGTGGGGGAGGAGGATCATCAAGCTCTCGTGCACGC
AGGTGGGCAACACCAAGAAGTTCCTCTACTCCCCGTTCACCGCCGACGACGCCGAGGCGA
CCGAGGAGCCAGCAGAGGAGCAGCCGAAGAAGAAAGGGTGGAAGGGGAAACACCCAAAGT
ACCAGACCAAGAAACAGCCGGCAGCAGCGGCTTGACTCTGATCCGCTGCGAGCATTCCTT
CGGGCATTTTCCTGCTGCTGTTGTTTCTTTTCTGTTTTACTTAGCACAGAAGAAAAGATT
TCGTGATGGACCATTTGGGTTGCCGCAAATTTCGCTGGCAGGCCAGTTTGCTGGGCTCTG
TGTTGTAGACTCGCTGGTAGAATAATGATGACATGAAAATCTAATACTACGTATCTATGA
TCCTTGAGATGCGTTGTGTGAGATTTGAGGCCAGAAAGGAGGATCTGTTAGCGTAAGGTG
AACAAATGGGTCCTTCCTCTTTGTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63550.1	159	4e-56	protein\|expressed protein
Brachypodium v1_2	Bradi1g01320.1	162	1e-63
Arabidopsis v10	None