barSeed - Barley Seed Development Database

Probe CUST_27639_PI390587928

Source Contig U35_45801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27639_PI390587928	Hv_44K_v2	CTAGATGGTTGGCATTCCCTGCTTCGTGAAATGGATATGAAACAATTTGTTCTGAAAAAA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74253.4	1918	3e-22	1277 - 1332	100	56 / 56	minus	ABC30328 ABC45108
MLOC	MLOC_74253.5	1915	3e-22	1274 - 1329	100	56 / 56	minus	ABC30328 ABC45108
MLOC	MLOC_74253.2	5936	3e-22	5295 - 5350	100	56 / 56	minus	ABC01774 ABC05485 ABC08976 ABC30328 ABC45108
JLOC1	JLOC1_49476.1	2677	1e-22	604 - 659	100	56 / 56	plus
JLOC1	JLOC1_49475.2	5962	1e-22	5304 - 5359	100	56 / 56	minus
JLOC1	JLOC1_49475.1	4936	1e-22	4278 - 4333	100	56 / 56	minus
Harvest21	ABC45108	535	3e-25	465 - 524	100	60 / 60	plus	ABC45108
Harvest35	U35_45801	535	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_45801 535 Hv_44K_v2
TAATCGATGGGGGATTAACTAGGCGCCAGCCCCAACTCCGGCCAGCGGGTCCACTTCCCC
GTCCAGTTGTCAGCCCAGCTACGGCGGATTCATGGTCGGACGACCTTGTCTTCACCCGAG
ATCCAGCGAAGCAGTTTGGCGGCGACGACGTGGCTTTCCCGGCCAGCGGGAGGCCCCCGT
CCTCCTTCGTCCTTGCTGCCCGTCCGCTGTCCTCGCCATGAGCGGATCTTGCAGAGCGTC
CACCACGACGCGTCCCTGCGGAAGGTCGCCTTCGGATCTGACTAGTCCAATCATGGCCGC
CACCGGATCCCTTCCCCTTCCCCTCTCTCGCGGACCCGACTGCACCGCGATGAACCAATG
GCCATGCCCGACCTCTCAACAACAGGAACCCTTCTGGCGACCTCTCTGTGTTCCTCATGA
AATTGGTTTTGTTGTGCATGATTTAAACTTGCCTTGTTTTTTTTCTAGATGGTTGGCATT
CCCTGCTTCGTGAAATGGATATGAAACAATTTGTTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_45801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None