barSeed - Barley Seed Development Database

Probe CUST_27631_PI390587928

Source Contig U35_21851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27631_PI390587928	Hv_44K_v2	CTTCTGCAAAGATGTTGCTAACGGATCCTAAAGCAGATTACTTACCAACTTTCTTAAAAA	1074	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.494	1.516	2.059	1.058	0.341	0.342
Raw	100.352	162.414	191.573	157.261	17.180	19.528

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81297.2	1993	2e-24	13 - 72	100	60 / 60	minus	ABC17338
MLOC	MLOC_81297.3	2308	2e-24	11 - 70	100	60 / 60	minus	ABC17338
MLOC	MLOC_81297.1	1773	2e-24	32 - 91	100	60 / 60	minus	ABC17338
JLOC1	JLOC1_54090.2	1567	8e-25	1485 - 1544	100	60 / 60	plus
JLOC1	JLOC1_54090.1	2018	8e-25	1936 - 1995	100	60 / 60	plus
Harvest21	ABC17338	714	3e-25	45 - 104	100	60 / 60	minus	ABC17338
Harvest35	U35_21851	1178	3e-25	1075 - 1134	100	60 / 60	plus

Contig Sequence (1178 bp)

>U35_21851 1178 Hv_44K_v2
GGTCAATGCAATGGTTCCCTTCATCTGCATCTCAGTTGCTGCTGATAGCCTACAAGGAGT
TCTCTCAGGTTAAAATTTTCTAACTAATTCATCTGTCAATTTTACTGTCCCTTCAAAAGA
GTGATGTTATAACGATTTCGGCGGCCGTAAGCTATATTTGTTTCCAGCCATGACACCATA
CTATGATATTTATATCTTTGCCCTGTAGTTTGATTTCCATAATTCAGTATGTAGCTTTTA
TCCATTTTGGTAATAAGCATTTGCTAGGTAGCAAGTGATACTATTATTTGTGAGTCATGC
TGATCTCGCAAAGACATTACCAGGTAACGTGCCACTTATTAGATTTATTAATGTTTCACT
ATACTAATGCTATTTTGTGTTGTGGAAGCCGACATTGTTACTTGGGGAGTTACCTGTTTG
TTCTTTCAAACATGTGCTCTTATGTGAACATGGATGCCGGTGTTTGCATCCACACACATC
TGGCTGGGATGTAATCTTAAGTGGGCGCCACCTCACTAAGTATCGCTCGAGGCTGTGGGT
CGCAGCACCTGGGTGCCTATGTTAACCTCGGCTCGTTCTATCTGTTTGGGATTCCAATGT
CCCTCCTTCTCGGGTTTGTTCTGAAGATGGGAGGAAAAGGGCTTTGGATGGGCATTTCCT
GCGGCTCCATAATGCAATTCCTACTCCTCGCCGGCATAGTGTTCTTCAGCAACTGGCAAA
AGATGTCTGACAATGCGAGGGAGCGAGTATTCGGCGAAACCCCAGCGGACAAGGAGCCTT
TGATGTCTGATGTAACGGCCGCTGCGTAATTTTGTCGCGATTTTTTCGATCCCTTGACCC
GAACTTGAAGCGGATGACACGGCAGCTTAATCTTGTGGCTGTAGAGGACAGTCTCCAATC
CAGTGGAATTCCTCATTTTTTTGCTTTGAGAGACGTGAATGTATAGAGAGGTGAGTTTGC
TGAAGAATCGGAAAAAAAATCAAGAACTAACTGGTGCCCGTAGTTGTAATGTTGCAATAT
TGTTGAGGTTGGGAAGATGGGTGGAAGTAACACGGGCGCACTTTCGGTAGCCATCTTCTG
CAAAGATGTTGCTAACGGATCCTAAAGCAGATTACTTACCAACTTTCTTAAAAATAAATA
AAAGCGATGACATTGCCATAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None