barSeed - Barley Seed Development Database

Probe CUST_27630_PI390587928

Source Contig U35_21852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27630_PI390587928	Hv_44K_v2	TTGTCATATGCTGTTTGTGAATTGCTTGGTCTTACAAAACGCACGCAGCCCATTGTTGGG	590	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.473	1.197	1.048	0.972	0.470	0.458
Raw	1497.033	1933.766	1470.167	2151.731	371.338	386.374

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51011.2	2334	2e-24	2142 - 2201	100	60 / 60	plus	ABC21042
MLOC	MLOC_51011.1	1664	2e-24	1465 - 1524	100	60 / 60	plus	ABC21042
JLOC1	JLOC1_32551.1	1636	8e-25	1465 - 1524	100	60 / 60	plus
Harvest21	ABC21042	682	3e-25	33 - 92	100	60 / 60	minus	ABC21042
Harvest35	U35_21852	682	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (682 bp)

>U35_21852 682 Hv_44K_v2
TCATCAGCAAAACTTTATGATGCACATGAATATGAATCAGCCTTTAATGCCCAATGCATC
ATTCAGTTACCCTGTCCAACAAGATGGGAATCCGCAGTACTTCAGTGCTCCTTTCCAGAT
GCAACTGCCAGATGCTGGGTCAGATCAAGGTTCGGTGTCAGGGCCTGAGGGGCTTCAGCG
CCCATGGGGCATGGGGTTGATGGGCAATCCTTCTCAAGGAGGTGGCGGCATGGCCTTCAT
GCCAGCTGGTTTCGGGATGATGCCTGACGGCTCGATGAATCCAGGCATGCAAGGTAGGGA
TTTCCAAGGCCAAGCTGACCGTGGTGACGGAAGGGGCGTCCAAGAACAGTTACCTATGGT
GATGCAAATGCAGATGTCGCTCCCCCCACCTCCTCCTACACAACCCCCATCGTCTGGACA
GCAGTCTTTCAACAGAACTTGATGAGTTTTTTTGCATGCCAATTTTGTGGCTGCTGCCAA
AATCGTGCTGTACTGCGTTGGGAAATTGCAATTTTGCCATCTTGGCATGTAACTGATGAG
CACTCTGATGGCAGCCTATATTGTGCTATAAACAATGCAACTTAATCGAGTTGTCATATG
CTGTTTGTGAATTGCTTGGTCTTACAAAACGCACGCAGCCCATTGTTGGGTTGCCAAATA
TTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None