barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27627_PI390587928Hv_44K_v2CTACGAATTCGTACTTGAATTACTTACGAAAAAGAGGTTTGCTTTCCTGACCTTCAAAAA608GeneList: thistle2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2801.1231.1581.3230.7790.729
Raw 6.79544.53638.65367.06014.23014.824



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_34790.213653e-22354 - 40910056 / 56minus ABC48434
Harvest35U35_218556803e-25609 - 66810060 / 60plus



Contig Sequence (680 bp)

>U35_21855 680 Hv_44K_v2
GAGGGGTTCTTGGACAGGACGAGGGGACGCGGGATGGTGGTTTCCTCCTGGGCGCCGCAA
GTGGAGGTGCTCCGGCACCCGGCGACCGGCGCGTTCGTGACGCACTGCGGATGGAACTCG
ACGCTGGAGGCTGTCGTAGCCGGGGTGCCGATGGTGTGCTGGCCCATGTACGCAGAGCAG
AGGATGAACAAGGTGTTGGTCGTGGAGGAGATGAAACTCGGGGTGGCCATGAGCGGCTAC
GACGAGGGGTTGGTTAAAGCGGATGAGGTGGAGGGGAAGGTGAGGCTGGTCATGGAGTCC
GAGCAAGGGAAGGAGATCAGGGAGCGGATGATGCTGGCGCAAGAGATTGCTGCGAATGCG
CTGGAGGTCGGTGGATCGTCAGCGGCAGCATTTGTTGACTTCCTGGACGATCTCAAGATT
TCGATGCTCGATTGAATCGTTGACTATGTTATTTAACCTTTTGTGTCCACCTTGTTCAGC
CTGTGTGCAACTGGAATCTGGATTTTCTAGGGTGGAATTTGTTGAGGTAAATTGTATACA
TTGTAGGAAAATTGATGACAGAGGGCCGTGGCCGCGCACGCATCGGTTCGTGAGCAAGAA
TGCTACACCTACGAATTCGTACTTGAATTACTTACGAAAAAGAGGTTTGCTTTCCTGACC
TTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_21855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g53420.15123e-73protein|anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Brachypodium v1_2Bradi2g49100.14743e-80
Arabidopsis v10None