barSeed - Barley Seed Development Database

Probe CUST_27623_PI390587928

Source Contig U35_21859

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27623_PI390587928	Hv_44K_v2	GAATACGTACATGCCTTTGCCATGTCTTGGATGTCATTCTATTGGAATTTGGCTGTGTGA	742	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.877	2.066	1.149	0.740	0.328	0.357
Raw	276.071	479.354	232.286	241.247	35.606	42.876

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4631.1	1682	6e-24	1624 - 1682	100	59 / 59	plus	ABC15683
Harvest21	ABC15683	831	3e-25	743 - 802	100	60 / 60	plus	ABC15683
Harvest35	U35_21859	831	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (831 bp)

>U35_21859 831 Hv_44K_v2
GGAATGCGGCACGAGGAGAGACAGGTCATTGCCACTCGGGACACGATCATGGACACCATC
ATGACCATGTCCATGATTCAGCTGTTACTAGTGTAAGTATTGTTTCTGAAGGAGTACTTG
ATCTTGATGAGGTTAATGATTGGCTGGAGAGACTGGTTGATGAGAAAGGCGAAGATCTGT
ACAGGCTAAAGGGTGTGATATCCGTCAACGAGTCAACTGGACGCTTCGTGTTTCAGGGCG
TGCACTCCATGTTGGAAGGTTGCCCAGCAAAGCCGTGGGAGGATGATGAGAAGAGGATCA
GCAAGCTCGTGTTTATCGGCAGGAATCTGGACGAAGCCGCGCTAAGGAAGGCCTTCAAAG
GTTGCCTGCTATGATGAACCCTCTGATCATGCGTTTATCATTGGGATCGTGGTCGAGTCT
GAGAATGACTATAGGCAAGTAAACAGGCGAAACGGACAAGCGCAAGGCCCTATGTTTTCG
TTTGGTGTTGATGTTTGCCCTAGAGTTCTCCGAGAAACCGAGTACTGTATCTTGTAGGCT
AGGCTAGAAGTAGAAAATCGAATTGTGTGGTACCCTTGTCTTGATGAGAACCATACATGT
ATGCCGTTGTACTTTTCTTGCGATTTAGGTTGAAATGGAAACCATGAAGAGTTTCTTTTT
TTTTTTGCGGGAAACCATGAAGAGTTTCTGGTGATGAAACTAGAGAGAGAATTCATGTGT
CAGCTCAGCCGTGTGGAACTCTGAATACGTACATGCCTTTGCCATGTCTTGGATGTCATT
CTATTGGAATTTGGCTGTGTGACCGGCTCTATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51100.1	412	4e-53	protein\|COBW domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g20490.1	411	1e-54
Arabidopsis v10	None