barSeed - Barley Seed Development Database

Probe CUST_27621_PI390587928

Source Contig U35_19541

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27621_PI390587928	Hv_44K_v2	CCAATGTTGGAGTTATCCGTTAATCTTGTCAACTTACAAAAAAGTTGCGAGTTATGTTTG	1897	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.408	2.515	1.043	0.550	0.206	0.183
Raw	174.515	140.221	48.257	41.448	3.068	3.734

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69795.1	1989	7e-23	1924 - 1983	98	59 / 60	plus	ABC13254
JLOC1	JLOC1_46272.1	2019	4e-23	1924 - 1983	98	59 / 60	plus
Harvest35	U35_19541	1974	3e-25	1898 - 1957	100	60 / 60	plus

Contig Sequence (1974 bp)

>U35_19541 1974 Hv_44K_v2
GAAATAAAACCTTTTCGAGCCGATCGCCTCGAAAGCGCAAACCAACCGCCCGCCCGCCCG
TGCCCCGTAACCTAGTACAAATTCCGTCGATCTGACCCTGTTCCTCCTCCTCGAGCCGTC
GAAGAATCCACAAAGGAACGATTGTGAATGTTCTAAATGATGTCAAAAGCCGGAACGAAG
TCTAGTAGTAGTAATTCCATGTACGAAGCTCCCCTCGGTTACAAGATTGAGGACGTTCGC
CCGGCCGGAGGAATCAAGAAGTTCCAGTCTGCTGCCTACTCCAACTGCGCCCGCAAGCCC
TCCTGATATTCCCTTCGCATGCCTTTCGACGTAGCATAGGATTTTTATTACTGCAATTTC
CCTTTCCTTTTATTTCCCAATAATCCTCCCTTGGCTGGCTGCTTCCTCTGCTACTCCGGT
TGTTATCTCCGATCTCCTCTGTCCTCTGTCATCCTCTCTTCTTCCTCGCAACACTTGATC
AGATGGAAATGTCTTTGGCTGACTGCTGGGGCTCTGCCCCTGCCTCCCCTATTGGGTTTG
AGGGCTACGAGAAGCGCCTTGAGATAACTTTCTCCGACGCGCCTGTCTTTGCGGACCCCT
GTGGCCGTGGCCTTCGCGCCCTCTCTCGCCAGCAGATCGACTCCTTCCTCGATCTTGCAC
GGTGCACCATTGTGTCCCAGCTCTCGAACAAGCAGTTCGACTCTTATGTGCTCTCGGAGT
CGAGTCTCTTTGTGTACTCCCACAAGGTTGTCATCAAAACCTGTGGAACCACAAAGCTTC
TGCTGTCGATTCCTCGCATCCTCGAGCTTGCTGCGGAGCTGTCGCTGCCTCTTCTTTCTG
CGAAGTACTCCCGCGGGACGTTTATCTTCCCTGGCGCGCAGCCCGCGCCTCACCGCAGCT
TCTCGGAGGAGGCATCCGTCCTGAACGACTTCTTTGGTGGCCTCAAGTCTGGTGGCAATG
CGTACGTGATGGGTGATGCGTTCACGCCCAAGAAGATGTGGCACGTCTACTATGCCACGG
AGGAGCCTGAGCAACCCATGGTCACGCTCGAGATGTGCATGACTGGGCTGGACGCAAGGA
AGGCTGCGGTGTTCTTCAAGAACTCTGCCGACGGCGGCTGCTCCTCGGCCAAGATGGTCT
CGGGGATCTCTGCTATCATCCCGGAGATGGAGATCTGCGACTTCGACTTCGACCCGTGCG
GGTACTCGATGAACGGCGTCTGTGGCCCTGCAGCCTCCACGATCCACGTCACTCCAGAGG
AGGGCTTCAGCTACGCCAGCTATGAAGCCATGAACTTCAACCCTGGCTCCCTGGTTTACA
GTGACCTGATCAAGAGGGTGCTGTCATGCTTCCGTCCGTCAGACTTCTCAGTCGCCGTCA
CCATCTTCGGTGGCCACGGCTTCGCCAAATCATGGGCGACCAGTGCGGAGGTTGGCTCCT
CCTACCTATGCGATGATGTCGTCCAGCAGGAGCTTCCAGGCGGTGGCCTGCTCATGTACC
AGAGCTTCAGCGCGGTTGCCCCTGGCGCCGTGTCGCCGAGGTCGACCTTGGACGATGGCT
GGAGCAGCGACGGGATGGAGACGGCCGTGCAGGGCGAGGAGGCGTGCGTCTGGGGAGTGA
AGAAGAAGTCTGCCGGGAAAGATGTCGTCGCTGCCTGAGAGAAATCCAGAGACGTCTGAA
GTCTCTGAGATGGTATTCTGCTATGGTAGTATCGGTTAAGCAGCTGGCCGGGTGACCGGC
AAAGCGTATCTTGTCTACTGTTTGTTTTTATCTATTGTTTCTGCTGAATAAGTGCTCTAG
ATGGTCTGCTGCGTCTGCCATAATGAGCGAAGTATATTTGTTTCTGTCGCCGATGCTCTT
GTGGGGAGAATGATATTGTAACTCGACTGTGTTCAAACCAATGTTGGAGTTATCCGTTAA
TCTTGTCAACTTACAAAAAAGTTGCGAGTTATGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25625.1	393	0.0	protein\|S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed
Brachypodium v1_2	Bradi4g30637.1	393	0.0
Arabidopsis v10	AT3G02470.1	366	5e-105	\| Symbols: SAMDC \| S-adenosylmethionine decarboxylase \| chr3:510223-511323 FORWARD LENGTH=366