barSeed - Barley Seed Development Database

Probe CUST_27620_PI390587928

Source Contig U35_19542

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27620_PI390587928	Hv_44K_v2	CATCGTGACCTTTTTCTGTTACGACAAAATCCAAACAATGACGTGATTGATCATTGCAAA	1110	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.494	0.747	0.747	1.478	1.237	1.658
Raw	161.721	385.463	341.035	1030.024	310.679	444.988

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251889.1	1140	9e-22	1054 - 1111	98	57 / 58	plus	ABC11153
JLOC1	JLOC1_12290.1	1413	1e-23	1259 - 1316	100	58 / 58	plus
Harvest21	ABC11153	1184	3e-25	1111 - 1170	100	60 / 60	plus	ABC11153
Harvest35	U35_19542	1184	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1184 bp)

>U35_19542 1184 Hv_44K_v2
CGAGGCGCCACTCCGCCCCCTCCGGCCCTCTTATCCTCTTCCTCTTCCTCTCGGGACGGC
GGTGGCGCCGAGGGCACCGAGGCCTCATTCCACCTTAGCACGCAGGTAACCGTGCTTTGT
GCAAGGCCGGGCTTACACAAAAATGGTTCTCTGTCAAGGCTTATCTGCTGGGCATGCCCA
GCTGCTTGCTTTTCCTGCTGCTAAGCCTCCTCTCTTAAGAAGATCTTGCATTCGTATTCC
AGCGGGATCGCCGAGTGTAAGAAGTGCTGGGCTTTCATCCGAGAGGAAGAAATTTTCGGT
GCAAGCTGTACGAGCCGGTACTGGTTTTCTTCACCATGACATGCTCACATCATTTCCGAT
GGAGGGTTCGATCAAGGGCATTCCATCATTATTGACCCTGCAGAATCAGCGTCGAAGGTC
GGATGTTGGTTGTCGAGCTTCCTCTCTAGCATCATTCAGCTACCCTGAATTGACTTCCAA
GCCAAGATGGTGGTGGAGAACTCTTGCATGTGTGCCGTACTTGCTGCCACTCCACAACAT
GTGGTCGTATGCCGATGTCATCTACCAGCTACACACGTACTTGCAGGGCTTTTCATTGGT
TTATACTTTCATCGACACCATGACACTGCTTCCAGGGTGGCTCTTGCTGGTGATATTTAT
GACTGTGTACTTCTTCGTGGTGAGACGCAAGTGGTCACCCCACTTCATGAGGTTCCATGT
GATATTGGCCATCCTCCTGGACACTGGTTCCCAAGCAGTGGCAACAATGTGCACCTGGAT
GCCCAGCTTCGTGTATCAGGGGAAGCCCATGCAGTATTTCTGGATGGCCATTGCTTTCAT
GCAGATCTTCACGGTGCTAGAGTGCATGCGCTGTGCTCTCTGTGGGATGTACCCGAACGT
TCCTTTCATATCTCACACGGCGTTTATCCATTCTGATCTGAATCTCTTCAGGTAGCCACC
TGCTCGCCCTGTCGGGTTTTTGATATCAGAAGGATGGAAAGTGAGATGGAGGTGCAAATA
GGTAGTACTTTTTTTTTTGCGGTAGCTACTTACAGTTCTATAGACTGTTTTGTTTATACT
GAAATTTTGAAGTCTCATTGTAATGGCCAGCATCGTGACCTTTTTCTGTTACGACAAAAT
CCAAACAATGACGTGATTGATCATTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38110.2	273	9e-157	protein\|tic20, putative, expressed
Brachypodium v1_2	Bradi1g24250.1	273	7e-163
Arabidopsis v10	AT1G04940.1	274	9e-57	\| Symbols: TIC20 \| translocon at the inner envelope membrane of chloroplasts 20 \| chr1:1399588-1400616 FORWARD LENGTH=274