barSeed - Barley Seed Development Database

Probe CUST_27618_PI390587928

Source Contig U35_19544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27618_PI390587928	Hv_44K_v2	GTAATGCTGGATCTATTTCAAGCAGCAATGCTGGATTTTATTGTATTCTGAATCGCTTCG	1267	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.246	1.308	0.987	0.975	0.551	0.545
Raw	972.704	1555.424	1054.851	1599.001	326.756	348.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10641.1	1297	2e-24	29 - 88	100	60 / 60	minus	ABC11258 ABC36922
MLOC	MLOC_10641.2	1370	2e-24	29 - 88	100	60 / 60	minus	ABC11258 ABC36922
MLOC	MLOC_10641.3	2297	2e-24	19 - 78	100	60 / 60	minus	ABC11258 ABC36922
JLOC1	JLOC1_6977.3	1390	8e-25	1286 - 1345	100	60 / 60	plus
JLOC1	JLOC1_6977.2	1357	8e-25	1253 - 1312	100	60 / 60	plus
JLOC1	JLOC1_6977.1	2140	8e-25	2036 - 2095	100	60 / 60	plus
Harvest35	U35_19544	1369	3e-25	1268 - 1327	100	60 / 60	plus

Contig Sequence (1369 bp)

>U35_19544 1369 Hv_44K_v2
GGCGACTGGTACTGCGGCGGGTGCGGCAACCGCAACTACGCCTTCCGCTCCCTCTGCAAC
CGCTGCAAGCAGCCGCGCCTCCTCGTCGACCCCAACACCCCGCGCGACTCCAAGTGGCTC
CCACGCGCCGGCGACTGGATCTGCAACGGTTGCAGTAACAATAATTATGCATCCAGAAAG
AACTGCAAGAAGTGCAACCTGCCCAAGGAGGAAGCAGCCATGCCACAATTATCAATGGGA
GGAATGATGCCAGCGTATGCAGATTATATGGCCAGGGTACAGGAGATTGCCAATGCTGGC
TATAAGATGAACTTTGGCAATCCAGCTATGCAGCAGCAGCTACTTGCAAACGCAAACTGG
CCTTATGGGATGGCTGCTAGATATGGTATGCAATCGTCTCTTTGGCAGTTCGCCGGCAAC
AGCACTAATCAGTTTCAAGGTGTTCCAAAGGACTGGCGTAGTGGTGACTGGCTCTGCAGC
TGTGGATTCCATAACTACTCATCTCGTGCTCAGTGTAAAGAGTGTAATGCACCTGTCCCA
TCAGGCATGGCCTCTACAACCATGAAATCCACAGGAGCAGATAGTTCTTCAACATTAGGT
AATAAGCGGTTGGCATCAGAGGAGCTTGCTAATGACTGGGATAATAAAAGGCTGAACCCA
GGAAATGCTAATTATCCACTTTCAACAGCAGGCTCAGATAATTTATTTATGGGTCAAGGA
GCTGGAAACAATAATGGCCAGACAACTTATTCTGCATATGACAATGGAAACTCAATGGCA
TTACCCTCTGGACAAGTTCCAGGGATGTCTGGTGTAGTTGGGAAAGGAGCAAAATGGCGT
GAAGGAGACTGGTTGTGCAACAACTGCAGCAATCATAATTACGCATCTCGTGCATTTTGT
AACAGATGCAAAACTCCGAAAGAGTCTTCGGTTCATCCGGGTGCGCTATAATAATAGCTT
TGCTTGTACTTTTGCGACTCAAGTTATTCAAGTGGTGTGGAGTCTCCTGGTTGTGCCCCA
GCTGACCGTCTGCTGCCGCCACCAGGATTGTTGTTATGTTTGTGGTTTGGCCCTGCAGTG
CTTACTTTGCTGTTAAAGATGTTTTGTCTCAGTCTAATATTGTTTGTGTGAGTTTGCTTT
TGTTTACGCCGAACACTAGAATAAAATGTTTCCTGTATGTCGAAGTGTACCAAATTTTTT
TTTTTGGTGTGTGTGTGTGGGAACAATTGATTGGTTTCTTTGCTACATTTGGCAGCTATG
ATGGAATGTAATGCTGGATCTATTTCAAGCAGCAATGCTGGATTTTATTGTATTCTGAAT
CGCTTCGNCCCTGTGAAAAAAAAAAAAAATAAAAAAAAAGTCGAGGGGG

Homology of Contig U35_19544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02000.1	344	0.0	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi5g01960.1	343	0.0
Arabidopsis v10	AT2G17975.1	268	1e-79	zinc finger (Ran-binding) family protein \| chr2:7822238-7823970 REVERSE LENGTH=268