barSeed - Barley Seed Development Database

Probe CUST_27617_PI390587928

Source Contig U35_33838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27617_PI390587928	Hv_44K_v2	CATGCTCACCTGCAAATGAAGTAAGCTGTAAGGCTGAAATATTTGTGATTTATCATTGTT	225	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358031	2047	2e-24	1907 - 1966	100	60 / 60	plus	ABC10851
MLOC	MLOC_70130.1	1749	2e-24	1610 - 1669	100	60 / 60	plus	ABC10851
JLOC1	JLOC1_46527.1	1764	8e-25	1601 - 1660	100	60 / 60	plus
Harvest21	ABC10851	1575	3e-25	1481 - 1540	100	60 / 60	plus	ABC10851
Harvest35	U35_33838	286	3e-25	226 - 285	100	60 / 60	plus
Harvest35	U35_4805	1596	3e-25	1481 - 1540	100	60 / 60	plus

Contig Sequence (286 bp)

>U35_33838 286 Hv_44K_v2
CCTGCAGAGCACACTGTGCTCAATGCATGTCCGGCAATGGAGCCATCCCAACTGGAGCGA
TGCAGGTGACGGACACAGCCCATAACCCTGGGCCCTTACTCCATTGTGTTTGCTCATATT
CCAGACTTTAATGCTCCTGCCTGTAGGTAGATTGTTGATTGGTTTTTGTGGGAAATTATC
CCGTTATCGTAGGTTAGAGTAAGTGCCGGTGGGTGAGAAGCAAAGCATGCTCACCTGCAA
ATGAAGTAAGCTGTAAGGCTGAAATATTTGTGATTTATCATTGTTT

Homology of Contig U35_33838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None