barSeed - Barley Seed Development Database

Probe CUST_27609_PI390587928

Source Contig U35_45812

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27609_PI390587928	Hv_44K_v2	TCGACCCCGTTTTGGCCGTCGCAAGGAAGAACGGTGTGGTCGAGTTGCTCAATCCCCTCA	193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252740.1	1808	2e-24	294 - 353	100	60 / 60	plus	ABC10444
JLOC1	JLOC1_41622.1	1879	8e-25	399 - 458	100	60 / 60	plus
Harvest21	ABC45123	253	3e-25	194 - 253	100	60 / 60	plus
Harvest35	U35_45812	253	3e-25	194 - 253	100	60 / 60	plus

Contig Sequence (253 bp)

>U35_45812 253 Hv_44K_v2
AGGATGCCGCGGATCACTTTTTTGGAGAGCCCTGGGTGCCCGCCGCTCCGCGCCATCACC
ACCGACATCCTCGGCCTCATAAAAGTCGTCAAGGCCCGCGCTAGGCCGGCGGGCGTCGCC
AAGGTCGTCGAGACGTGGGGCGAACCGGACGCCTCCAGGGCCATCCTCGTCGCTTCACTC
GCCGACCGATCCGTCGACCCCGTTTTGGCCGTCGCAAGGAAGAACGGTGTGGTCGAGTTG
CTCAATCCCCTCA

Homology of Contig U35_45812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None