barSeed - Barley Seed Development Database

Probe CUST_27605_PI390587928

Source Contig U35_21862

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27605_PI390587928	Hv_44K_v2	CCATGCTGGCATATTTTAATTTCTGTAACGATACTAAGTGAACAGCGTGAAATTTTGACA	602	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.166	2.213	1.261	0.683	0.350	0.336
Raw	272.516	426.299	216.280	186.425	32.070	34.599

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43336.1	1052	8e-25	66 - 125	100	60 / 60	minus
Harvest21	ABC16809	684	3e-25	23 - 82	100	60 / 60	minus	ABC16809
Harvest35	U35_21862	684	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_21862 684 Hv_44K_v2
ATATTCGGATGACTACTGGTAAATTTGTTGGTAGATGCCCATGGTTGCGTGTTAACGCGG
AAAGCATCTTTTGCATCGGCTGCAAATGAGCATGAGCGACCTCCTTGCACCAAGGTGTGT
GGCATTTGTCATCCTGGAGTTGTTAGGGTGCCACTGCTTAACTTGCCGTCCTCCATCCTC
GGCGCCCAGAGATGCATTGCAGCTTAGATGTCTGCCATTGCAGCCTAGATGTCTGCTCTT
GCAGTTCTTTGGAAGAGTATGGAAATTTAAGGTCTGGATGGTCTACAGGATTGTTTGGTG
GTTGAATATCTTAAACGCCACCGTTCAAGGTGACATCAGAGGGAGAGAGTTTTTCACTTT
CCCTTTACAGAACAACATTATTTGTTCATGGTTGTGCACAGGGATGCATTAGTTATTTCT
GGTGGGCTGGTATCAGGGGTTTTGTTACATTTACGATTACTTCATGTAATGTGCCCTACT
TGACGGTGGGAAACAATGTTGTATCGTAGTCAAATCTCTTTAAGTTACCAGTTGATTGTT
CTGTAGAAGTATAGTATTGTTCACGTGTTTTGGTTTCTTTTTGGTAAAGGTGTCGAATTT
ACCCATGCTGGCATATTTTAATTTCTGTAACGATACTAAGTGAACAGCGTGAAATTTTGA
CAGTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None