barSeed - Barley Seed Development Database

Probe CUST_27604_PI390587928

Source Contig U35_21863

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27604_PI390587928	Hv_44K_v2	CCTGGGATTTTTCGGAACTTTGTACTATCATTCTATGGATTGTTTATGATGTCAAAGCTA	1054	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369115	1256	2e-24	1073 - 1132	100	60 / 60	plus	ABC16912 ABC49970
MLOC	MLOC_74157.1	1011	2e-24	82 - 141	100	60 / 60	minus	ABC16912 ABC49970
JLOC1	JLOC1_49404.1	1086	8e-25	895 - 954	100	60 / 60	plus
Harvest21	ABC16912	1591	3e-25	1516 - 1575	100	60 / 60	plus	ABC16912
Harvest21	ABC49970	672	2e-21	1 - 58	97	58 / 60	minus	ABC49970
Harvest35	U35_21863	1132	3e-25	1055 - 1114	100	60 / 60	plus

Contig Sequence (1132 bp)

>U35_21863 1132 Hv_44K_v2
GAGGGCTACATACTTCTTCCGAAGACTACTGTTGATGTTTTTGCGTTGGTTCTTGAGTCT
GGTGGCAGTATGATACTATTCATGACTTTGCTTTTGGTTTCCAGTTTATTACACTAGTTA
CATATTGCATCTTTCTACTAGGAAATGCTCCTAAATTATTTTCCAGTGCTTATTCAGAAA
TTGTGTTCATATTCTTACTCATCTTAATGTCAATAACGCAGTATGTTCTTGCTCTTGTAA
TATAAGTTAAAGTCAAGTTATATTACTCACAAGTTCATAGTATGAACGTGCTGTTTTGTC
GCAGTCCTTACTAACTTGAGAAAAAGTGAACATATTTAGGCAGGTTAGGTAAGTAATGAG
TTAATACTTTTAGTGTGCATTTCATCACATTTGCCGATACATTTTGTATCTCTTTCCATA
TTTTATTTGACAGAAGCCTTTCTCCCTCACCATTTCTTTCTGCAGTACCATACTTTCTGA
TAAAGAGAAGCAACTACTTTCATCCTTACCACTCTCTTTTATTTCAGGCGATCTTCCCAT
TATAATATCTTGCGCTAGTCTTGCACTGGCAGATGCTGGGATCATGATGTATGACCTTGT
TACATCAGTATCTGTGTCCTGTTTAGGGAAGAATGTTATCATCGATCCAACCTCAGACGA
GGAGGCATGGCAAGACGGAGGCCTTATGGTGTCTTATATGCCGGCCCGCAAGGAGATCAC
ACAACTTACGCTGACTGGGGAGTGGACTGATGGCAAAATCACCAATGCAGTAGAGCTCTG
TATGGATGCTTGCAGCAAGCTTTGCGAGATATTGCGGGAGCGCTTGAAAGACCCCGCGAG
CCTGGCGAGCGAATGACATTTGAGCAGACACATGTTTGCAGAATCGCAACAGATATCCTT
AGCTGTAGAAGTTTTGTAGGGAAGGGAGGACAGGACTGCTGTTTGCAGGAGCACAATTTG
CATGGCTGTGGTGATTGTTTCTTTTGGCAAAAGAGTTTAGCCGAGAGAAAATCTTGTAGG
TGTGCAAGCCATGTCTTGTACTGTGAGTTCGGAACCTGGGATTTTTCGGAACTTTGTACT
ATCATTCTATGGATTGTTTATGATGTCAAAGCTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62720.2	248	2e-61	protein\|exosome complex exonuclease, putative, expressed
Brachypodium v1_2	Bradi1g20450.1	263	2e-64
Arabidopsis v10	None