- Probe CUST_27603_PI390587928
- Source Contig U35_21864
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27603_PI390587928 | Hv_44K_v2 | GTTGCTCCAGAAGTTTGTAGCAAGAAAACGACCGAGAATAATATTTGGAAATAAAGATTC | 287 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.343 | 2.587 | 1.266 | 0.603 | 0.120 | 0.093 |
| Raw | 57927.000 | 67003.867 | 30119.267 | 23189.537 | 1632.925 | 1358.195 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75777.1 | 451 | 2e-24 | 361 - 420 | 100 | 60 / 60 | plus | ABC15557 |
| JLOC1 | JLOC1_50541.1 | 438 | 8e-25 | 328 - 387 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15557 | 429 | 3e-25 | 288 - 347 | 100 | 60 / 60 | plus | ABC15557 |
| Harvest35 | U35_21864 | 429 | 3e-25 | 288 - 347 | 100 | 60 / 60 | plus |
Contig Sequence (429 bp)
>U35_21864 429 Hv_44K_v2 GAGAACCACAACCTGAAGGACTTAGGAGACGAAAACAGTACACAAATTCGTTATGGCTCT ATTCCGGATCAACACACGTGTTTTGTGCTTGATGGCACTTTTGCTGGTTTCAACAACTTT GTTGTTGTGTGAAGCATCAGGGAGGAACATAGGCCTTGAAGATGCCACTTGCGGTGCGGG GTACCATGAACCCTACTCTCCTCCCCCTTGTGCGGATGCTAAGTTGTGTGATCACTTCTG CAAGCAAGATGGTAAGGGAGATGGGACCTGCCGTAACGGTGCATGCTGTTGCTCCAGAAG TTTGTAGCAAGAAAACGACCGAGAATAATATTTGGAAATAAAGATTCAATTGGGAGCATT AAGAATTGTATTTCTTTCTGGAGTAATTTGAATGAAACTTCTTGATTTTTGTAAAAAAAA AAAAAAAAA
Homology of Contig U35_21864 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |