barSeed - Barley Seed Development Database

Probe CUST_27598_PI390587928

Source Contig U35_21869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27598_PI390587928	Hv_44K_v2	ACAGATTGCTGTGAAAAGGCTCAAGAGTTGGAGCAACAAGGCTGAAAAGGAGTTTGCTGT	428	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.202	1.239	1.641	1.001	0.510	0.426
Raw	19.338	29.350	34.646	34.624	4.806	4.701

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248465.1	1596	2e-24	425 - 484	100	60 / 60	plus	None
MLOC	MLOC_14936.3	671	2e-24	4 - 63	100	60 / 60	plus	None
MLOC	MLOC_14936.1	1964	2e-24	745 - 804	100	60 / 60	plus	None
MLOC	MLOC_14936.2	1157	3e-22	44 - 103	98	59 / 60	plus	None
JLOC1	JLOC1_10209.1	1299	1e-22	89 - 148	98	59 / 60	plus
Harvest21	ABC16665	544	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_21869	617	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_21869 617 Hv_44K_v2
CGACAACGCCCCGAGAACGAGAACTCCTGTGCTGCCCATCTCCCCCTCTCTCTCTCCACT
GAGCCCTCCTGTGCTGCCCCCGCTGACCTGCGGCCACCGACGGCGTGTGGAGGCTGAGGG
CGGGTTTCCGTCGCGACCGCCTTGCCGCGGGCTCCCCGGCCGCGACTCGGCAGGCTTCGC
GCGAGCTGGTGCTGATTTGAGGGAGATTCGGGGCCGGAGCCAGCGCGACCTCGGGGGATG
GGGTGGCTTTCCTGCTGCAAGCGGTCCAACGGGGCCCAACCCGGCAGGAAGAAGAAGAAG
AAGGACACGGCATGGCGGATCTTCTCACTCAAGGAGCTTCAGTTGGCGACCAACAATTTC
AACTACGATAACAAGCTTGGTGAAGGTGGATTCGGCAGTGTCTACTGGGGCCAGCTCTGG
GACGGATCACAGATTGCTGTGAAAAGGCTCAAGAGTTGGAGCAACAAGGCTGAAAAGGAG
TTTGCTGTCGAGGTCGAGGTTTTGGCACGAGTGCGGCATAAGAGCCTCTTGAGCTTACGT
GGGTATTGCGCTGAAGGCCAGGAGCGTTTGATTGTCTACGACTATATGCAGAATCTGAGC
TTGCACTCTCACCTGCA

Homology of Contig U35_21869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09359.1	378	8e-67	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi3g06290.1	370	4e-66
Arabidopsis v10	AT3G15890.1	361	9e-53	Protein kinase superfamily protein \| chr3:5374389-5376114 FORWARD LENGTH=361