barSeed - Barley Seed Development Database

Probe CUST_27590_PI390587928

Source Contig U35_19555

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27590_PI390587928	Hv_44K_v2	GTTTCTACATTAATTAATGGATCTAAGGTAGTTAGACGCACTCTGACTATAGTCAATCAG	1129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68188.1	394	2e-24	198 - 257	100	60 / 60	plus	ABC11959
MLOC	AK359868	1441	3e-21	1156 - 1215	97	58 / 60	plus	ABC11959
JLOC1	JLOC1_45098.1	333	8e-25	201 - 260	100	60 / 60	plus
Harvest35	U35_19555	1190	3e-25	1130 - 1189	100	60 / 60	plus

Contig Sequence (1190 bp)

>U35_19555 1190 Hv_44K_v2
CCACACCGCATCCTCCATCCCAGATCCCCCGCCTCTGCCGCACACGCCCCCTTCCCCCCG
CCGAAGCAAACTAATCCATCTACCCTGATCGAAGCGGAGGAATACGGGGGCGGAATGGAT
CTGGTGGTCGTGTCGGAGGAGCCCAATCCCAACAGCGAAGCCGCCGCCGCGCACAGCCGG
CCGGAGCCACCTCCACTCCGGTGCCCATCGATGGTCCTCCACACCGTCCCCCGGAGCTGC
TTCACCCACTCTGCTTGCCCCCGAGCAGGACTCGGCCCGCCCAGCAGCCCCTTGCCCCCT
TCATTCGGTCCGTCCGGAGCTGCACCGCCCACCACAACAAGGTCCCTGGAGGTTGGAGGA
GGCCTTGGGGAATGGGGATGGTGAGCGGCCAGCTGTCGGTAGAACCCCACTGCCATCTCC
CATATCCTGCCGCTGGCGAGGCGGACCATGGAGAGCGCGAGGAAGATTTGGTCATTTGCC
AGATGTGGCGATGGGCGTCTCATGAATGAACAATTGGAGGCTTTGCAGAAGAAGAGCACG
GAGAACACCCCTCTTCCTTTACAACTAAAATTGAATTTACAGCGAAGTGCAAATCAGCTC
GTGGAGGATCATTGGTTCCGTATGGGATGGATGTTTGGTCTACTGGCATAGGTGCTCATC
TCTTGACTAGGCTGGTGTCTGGTTGGTTTCATAGATTTAATTAGGTCCAAATTGAGTGGT
TTATCAAGGTCAGATGTGAGAAAATAGGATGAGAATTGGTGTATGGCCAGCACTTGGGTC
TGTCATCGAGGTCTCTCTTTCTATCGCGTTGCAGGTTGATTTGACTCCACACAGCGTCTG
CATCTCGCTCAATGTTGAAAATGCTGGCTTGGAGCGTGTCTCTAAAGTATTGCTGGCTTT
TCCGAACATCTAAGCAAGAAACAGGGCATCAATCAGGGCATTTGGTACCGAGGGGAAAGT
GAAGGGCCTGAGTATTGTTCTTCCGATTGAAGTTGTTGAACCTTGTGATGTGCCCCGGGA
ACTCGCTTTCTTTCAGCATCTTAAACAAAGCTTTGAATACTATGCTAGCAGTTTGTAGTT
GTGCTCTGGATACATGTTCCCTCATTTGTAATAGACATTATTTTTCTTTGTTTCTACATT
AATTAATGGATCTAAGGTAGTTAGACGCACTCTGACTATAGTCAATCAGT

Homology of Contig U35_19555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None