barSeed - Barley Seed Development Database

Probe CUST_27589_PI390587928

Source Contig U35_19556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27589_PI390587928	Hv_44K_v2	TGGCATCGAGTTGACTATGGATTCAGAGTGATAAAGTTTTCTGATGATTCGGTTGCAGCG	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27256.2	1789	2e-24	867 - 926	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_27255.2	1293	2e-24	370 - 429	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_30901.4	1786	7e-23	864 - 923	98	59 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_30901.5	1273	7e-23	353 - 412	98	59 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_30901.1	1100	7e-23	184 - 243	98	59 / 60	minus	ABC11960
MLOC	MLOC_30901.2	1660	7e-23	865 - 924	98	59 / 60	minus	ABC11959 ABC11960
JLOC1	JLOC1_18425.5	1467	8e-25	743 - 802	100	60 / 60	plus
JLOC1	JLOC1_18425.2	1173	8e-25	743 - 802	100	60 / 60	plus
JLOC1	JLOC1_20383.7	1138	4e-23	742 - 801	98	59 / 60	plus
JLOC1	JLOC1_20383.6	1631	4e-23	742 - 801	98	59 / 60	plus
Harvest21	ABC11960	656	3e-25	518 - 577	100	60 / 60	plus	ABC11960
Harvest35	U35_19556	657	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_19556 657 Hv_44K_v2
AGAACATGCATGCTGCAGGTAGTGAGCTCGAGCTAATTCATCTCCTGGGATAATTCTTAA
ATACAATTTGGAACATTTTGTATTATTAGGAAAATAGTTTAGTCATCAGAAGTGGAACAT
ATATCCTGATCATTTATTTCTTACGAGGATAGATTGAACAAGACCACCTTACCTCCATGC
TCCAAACAATGCCAGCGTAGGATTAACTCTTAACAAATATTATCAGTAGTTTTTGGATTG
TGGCAATTTCTTCCCTGTTCTTCCCCCCCTTTTGCTTTTCTTTTTAAATGAATGTTCCTG
ACTTCTATGAAATTACCATGTTTACTGTAGACATTGCAATCATGTTGGGAATACGACGTT
TTGTTGATTTGACAAGGAATTTTTTCCTACTGTTTCAATATACATGCCCTCCATTGTAGC
ATTGGTAGATCTTCTCTTTTCTCCATGTGTACTATGAGATGATATATCTATTTCTATGAA
ATATAACTGTGTTTTCTGAAACAAAGTTGCAAAGAGATGGCATCGAGTTGACTATGGATT
CAGAGTGATAAAGTTTTCTGATGATTCGGTTGCAGCGAAGTGCAAATCAGCTCGTGGAGG
ATCATTGGTTCCGTATGGGATGGATGTTTGGTCTACTGGCATAGGTGCTCATCTCTT

Homology of Contig U35_19556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None